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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.H00100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 537aa MW: 60209.4 Da PI: 8.0887 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 290.7 | 4e-89 | 159 | 528 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 lL+ cA+av++g+ aq+lL++++++as++gd +qRla++f ++L+arla+++s+l + l+++ +++ l+a+kl+ ++ + +++ + Pahal.H00100.1 159 ALLIPCAQAVAAGSVMTAQELLKQIKQNASSTGDDTQRLAQCFSKGLEARLAGTGSQLWQLLTAEGPL---VIKYLKAYKLYMAACCFNRVALFF 250 68***************************************************999999988887776...************************ PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 +I a++g++++Hi+D++ +G+QW+ Ll+ +a+R++gpp+++iT++++ ++ +e +e tg+rL k A+e+gvpf+++ ++ r+e++ Pahal.H00100.1 251 NIMTIEHAMAGKSKLHIVDYGPHHGFQWVGLLRWMANRKGGPPEVKITAISRLQPRscPSEGIEDTGHRLGKCAREFGVPFKYHS-ITARWETIC 344 ****************************************************9999999**************************.699****** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++ ++++ +E+l+V + l+des l+ +rd+vL+ +++++P+v++ ++++ ++sFl+rf eal yysalfd+l+a++pr+ + r+ Pahal.H00100.1 345 TDFFKTDADEVLVVTDLFDFGILMDESIYLDRlsPRDTVLNNIRNMRPDVFIQGVVNSSY-GTSFLARFREALFYYSALFDMLDATIPRKCKLRS 438 ***************************9998877***********************999.679******************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++E+ +lg ++ nv+aceg + ++ e++++W+ r ++aG++++pl+ +++k k + k + +g+ v e+ +l++gWk+r L++ S W Pahal.H00100.1 439 VLEQSMLGHSVLNVIACEGVDLVNHPEKYGQWQVRNQRAGLRQLPLKPNIVKVLKEKVMKDHHKGFFVGEDGRWLLQGWKGRILYAHSTW 528 ***********************************************************9999*************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 49.63 | 131 | 509 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-86 | 159 | 528 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MVLSYISRVL MEDGAEDKIL CGNSDHSALL QVQEPFAQIL FSPSISENSD NTTNKCNMER 60 AMNLLQGRNG NQCTLSSAFS KGEDAGGAFL KSIEEASRFL PRDNGIRKDQ LVKQECSNHR 120 ASKAMMMMEE LEDMFDKMML RGDKKGGSKM RTDVVDLCAL LIPCAQAVAA GSVMTAQELL 180 KQIKQNASST GDDTQRLAQC FSKGLEARLA GTGSQLWQLL TAEGPLVIKY LKAYKLYMAA 240 CCFNRVALFF NIMTIEHAMA GKSKLHIVDY GPHHGFQWVG LLRWMANRKG GPPEVKITAI 300 SRLQPRSCPS EGIEDTGHRL GKCAREFGVP FKYHSITARW ETICTDFFKT DADEVLVVTD 360 LFDFGILMDE SIYLDRLSPR DTVLNNIRNM RPDVFIQGVV NSSYGTSFLA RFREALFYYS 420 ALFDMLDATI PRKCKLRSVL EQSMLGHSVL NVIACEGVDL VNHPEKYGQW QVRNQRAGLR 480 QLPLKPNIVK VLKEKVMKDH HKGFFVGEDG RWLLQGWKGR ILYAHSTWVA EDAISE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-34 | 164 | 529 | 26 | 379 | Protein SCARECROW |
5b3h_A | 1e-34 | 164 | 529 | 25 | 378 | Protein SCARECROW |
5b3h_D | 1e-34 | 164 | 529 | 25 | 378 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791278.1 | 0.0 | scarecrow-like protein 14 | ||||
TrEMBL | A0A1B6PU83 | 0.0 | A0A1B6PU83_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Hb00038.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-108 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.H00100.1 |