![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.H00097.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 603aa MW: 68646.7 Da PI: 6.6589 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 306.9 | 4.7e-94 | 224 | 594 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 elL+ cA+av+++d ++a++lL++++++as++gd++qRla++f+++L+arl++++s+l++ l + s +e l+a++l+ ++ + ++ + Pahal.H00097.1 224 HELLTLCAQAVATNDRRRAHELLKQIKQHASETGDATQRLAQCFAKGLEARLVGTGSQLSQFLMEDHLS---IVEFLKAYNLYMAACCFNNVLLI 315 579999******************************************************999999988...9********************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 +I++a+ g++r+Hi+D+++ + ++W+ Ll+ La+R++gpp+++iT++g+p+ +e++ee+g rL+k A+++gvpf+f++ + k+++++ Pahal.H00097.1 316 FSRMTIMQAMVGKRRLHIVDYGMRHWFHWAGLLHLLATREGGPPEVKITAIGHPHLRpcPAEQVEEIGCRLTKCAHKFGVPFNFHA-MRKNWDAV 409 *****************************************************998899***************************.8******* PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 +e+L+++++E+l+Vn +++ +l+des ++ ++d+vL+ +++++P+v++ + ++++ ++s+l rf e l yy+a+fd+++a++pres+ r Pahal.H00097.1 410 CIEDLNTDTEEVLIVNDHFNFSSLMDESIFFDDpnPKDTVLHNIRKMRPHVFIQSILNCSY-GSSYLSRFREVLFYYTAIFDMFDATMPRESKSR 503 ****************************977766699************************.6789***************************** PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +++E+ l+gr + n++aceg + +er e++++W++r ++aG++++pl+ +++k k +r ++ + + + e++++l++gW++r L++ S W Pahal.H00097.1 504 VVLEQGLFGRYALNIIACEGVDLVERPERYRQWQARNQRAGLRKLPLEPNIVKVLKDKVRSCHHKDFFICEDDQWLLQGWMGRILFAQSTW 594 ***************************************************************888************************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 50.976 | 197 | 575 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-91 | 224 | 594 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 603 aa Download sequence Send to blast |
MAITPEEFFV EGLIEQSPPS PSIFLHVSMK PDGRSEGDHD APRDMILPYI SRVLMEDDID 60 DKISDHPRLL QVQQPFAQIL SSPSFGANTD NTANSSGENA LDSALSKGAG VVRAFLKGME 120 EANMLLPKDN GVNESSSKSG VKKRYNSDEH LEEEEEVRRT RKSVVMIKEP EDICAHEMLD 180 DMMLRSDETY IRGMEKLRIA MAKEVEKSSR KGVRKAVRNL LDIHELLTLC AQAVATNDRR 240 RAHELLKQIK QHASETGDAT QRLAQCFAKG LEARLVGTGS QLSQFLMEDH LSIVEFLKAY 300 NLYMAACCFN NVLLIFSRMT IMQAMVGKRR LHIVDYGMRH WFHWAGLLHL LATREGGPPE 360 VKITAIGHPH LRPCPAEQVE EIGCRLTKCA HKFGVPFNFH AMRKNWDAVC IEDLNTDTEE 420 VLIVNDHFNF SSLMDESIFF DDPNPKDTVL HNIRKMRPHV FIQSILNCSY GSSYLSRFRE 480 VLFYYTAIFD MFDATMPRES KSRVVLEQGL FGRYALNIIA CEGVDLVERP ERYRQWQARN 540 QRAGLRKLPL EPNIVKVLKD KVRSCHHKDF FICEDDQWLL QGWMGRILFA QSTWVAEGAS 600 LG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-36 | 230 | 595 | 26 | 379 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791279.1 | 0.0 | scarecrow-like protein 33 | ||||
TrEMBL | A0A2T8IAE3 | 0.0 | A0A2T8IAE3_9POAL; Uncharacterized protein | ||||
STRING | Si024639m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G29060.1 | 1e-118 | GRAS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.H00097.1 |