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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.H00082.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 285aa MW: 30374.7 Da PI: 7.1656 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Pahal.H00082.1 71 YSCTFCQREFRSAQALGGHMNVH 93 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.98E-6 | 68 | 98 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.1E-4 | 69 | 96 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0053 | 71 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.198 | 71 | 98 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MNSSTAMDQI GKYWGIWGAR RSGSSSSSTA SPIPGWAEAA AAGSEPSWEE KAFARDAAAH 60 LGGCVWPPRS YSCTFCQREF RSAQALGGHM NVHRRDRALL RQGGSSPEDV HAPNDLPQQG 120 ALLYRAASNP STTTATTAAG TTAGSAAKGD AQDTTTTPTS YLSTIIKESK NKLLMSMPAS 180 MEMREDRQAI DQCDRDDSDR EESARTTKRR RLNHPSAAAL LIFVQPLAAA TEVTGCESSQ 240 ALQGLDHYAK VPQTTIPSPK SGSPLVDQHE VDLELRLGTT PKVT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 8e-13 | 66 | 93 | 2 | 29 | superman protein |
2l1o_A | 8e-13 | 66 | 93 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 207 | 211 | KRRRL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038716 | 1e-102 | BT038716.1 Zea mays full-length cDNA clone ZM_BFb0313F12 mRNA, complete cds. | |||
GenBank | EU972109 | 1e-102 | EU972109.1 Zea mays clone 375181 zinc finger, C2H2 type family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828169.1 | 0.0 | uncharacterized protein LOC112903166 | ||||
TrEMBL | A0A2S3IFW0 | 0.0 | A0A2S3IFW0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ha00323.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7845 | 29 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 1e-24 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.H00082.1 |