PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00061.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 502aa    MW: 54469.1 Da    PI: 7.324
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00061.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.41.4e-107404871374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     l++lL++cA  v++g + +a+++L+++ +las d+  ++qRlaa+f+ ALa++l++ v++l++al ++++s  +     aa++ ++++ P++k++
  Pahal.H00061.1  40 LISLLYQCAAEVAAGAFDRANHCLEQITQLASLDApHTLQRLAAVFADALARKLLNLVPGLSRALLSTANS-AEAHLIPAARRHLFDMLPFMKLA 133
                     5799*******************************99**************************99777776.345555578888*********** PP

            GRAS  95 hltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     +lt N+aIlea+ege+ vH++D++  +s+++QW+aL++aL +R++gpp+lRiT+v++     ke l +++  Lak Ae+l++pf+f++ v+ rl+
  Pahal.H00061.1 134 YLTSNHAILEALEGEKFVHVVDLSgpASNPVQWIALFHALRARRGGPPHLRITAVHD----GKEFLANMAGVLAKDAEALDIPFQFSA-VEARLD 223
                     ***********************87789*****************************....9**************************.799*** PP

            GRAS 188 dleleeL....rvkpgEalaVnlvlqlhrll................................................................ 214
                     +l++++L    rv++gEala+++v qlhrll                                                                
  Pahal.H00061.1 224 ELDPDALrqllRVRSGEALAISVVAQLHRLLaaddagrrhvpgsscltpvqiiarsspssfgellerelntrlqlspdsssvvsslspqspvlqa 318
                     **9988766668999******************************************************************************** PP

            GRAS 215 ....desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacega 303
                         +++ + + +  ++L++v+ lsPk++vv+e ea+hn++ Flerf eal+yy++lfd+le   +++    er+ vEr +lg+e++ vva ega
  Pahal.H00061.1 319 aaaaQQQRPAAAKLGSFLQAVRALSPKIMVVAEPEANHNAAAFLERFEEALNYYASLFDCLERASAAHRcaAERARVERLVLGEEVRGVVAREGA 413
                     **996666666679***********************************************6654444445************************ PP

            GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee..sgslvlgWkdrpLvsvSaWr 374
                     er+erhe+l++W +r+e aG++ v +s+  +++a+ ll+  + +  y+v ++   ++++++W++rpL+svSaWr
  Pahal.H00061.1 414 ERKERHERLAQWARRMEGAGMERVGMSYGGMMEARKLLQSLGcGGSYEVVHDapGEAFFFCWHRRPLYSVSAWR 487
                     ******************************************6666**99775466777**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.40714464IPR005202Transcription factor GRAS
PfamPF035145.0E-10540487IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MDIFPEDTVS SATSSLYSPS PHGYGSWVQE LSHDQQSVRL ISLLYQCAAE VAAGAFDRAN  60
HCLEQITQLA SLDAPHTLQR LAAVFADALA RKLLNLVPGL SRALLSTANS AEAHLIPAAR  120
RHLFDMLPFM KLAYLTSNHA ILEALEGEKF VHVVDLSGPA SNPVQWIALF HALRARRGGP  180
PHLRITAVHD GKEFLANMAG VLAKDAEALD IPFQFSAVEA RLDELDPDAL RQLLRVRSGE  240
ALAISVVAQL HRLLAADDAG RRHVPGSSCL TPVQIIARSS PSSFGELLER ELNTRLQLSP  300
DSSSVVSSLS PQSPVLQAAA AAQQQRPAAA KLGSFLQAVR ALSPKIMVVA EPEANHNAAA  360
FLERFEEALN YYASLFDCLE RASAAHRCAA ERARVERLVL GEEVRGVVAR EGAERKERHE  420
RLAQWARRME GAGMERVGMS YGGMMEARKL LQSLGCGGSY EVVHDAPGEA FFFCWHRRPL  480
YSVSAWRPAA GRHSGGRLVG S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-25282447217Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827468.10.0scarecrow-like protein 3
TrEMBLA0A2S3ID030.0A0A2S3ID03_9POAL; Uncharacterized protein
STRINGPavir.Cb02147.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-97scarecrow-like 3