PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pahal.H00061.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 502aa MW: 54469.1 Da PI: 7.324

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H00061.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	351.4	1.4e-107	40	487	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA v++g + +a+++L+++ +las d+ ++qRlaa+f+ ALa++l++ v++l++al ++++s + aa++ ++++ P++k++ Pahal.H00061.1 40 LISLLYQCAAEVAAGAFDRANHCLEQITQLASLDApHTLQRLAAVFADALARKLLNLVPGLSRALLSTANS-AEAHLIPAARRHLFDMLPFMKLA 133 5799*****************************99**********************99777776.345555578888******* PP GRAS 95 hltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187 +lt N+aIlea+ege+ vH++D++ +s+++QW+aL++aL +R++gpp+lRiT+v++ ke l +++ Lak Ae+l++pf+f++ v+ rl+ Pahal.H00061.1 134 YLTSNHAILEALEGEKFVHVVDLSgpASNPVQWIALFHALRARRGGPPHLRITAVHD----GKEFLANMAGVLAKDAEALDIPFQFSA-VEARLD 223 *******************87789*************************....9**********************.799* PP GRAS 188 dleleeL....rvkpgEalaVnlvlqlhrll................................................................ 214 +l++++L rv++gEala+++v qlhrll Pahal.H00061.1 224 ELDPDALrqllRVRSGEALAISVVAQLHRLLaaddagrrhvpgsscltpvqiiarsspssfgellerelntrlqlspdsssvvsslspqspvlqa 318 9988766668999**************************************************************************** PP GRAS 215 ....desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacega 303 +++ + + + ++L++v+ lsPk++vv+e ea+hn++ Flerf eal+yy++lfd+le +++ er+ vEr +lg+e++ vva ega Pahal.H00061.1 319 aaaaQQQRPAAAKLGSFLQAVRALSPKIMVVAEPEANHNAAAFLERFEEALNYYASLFDCLERASAAHRcaAERARVERLVLGEEVRGVVAREGA 413 996666666679*********************************************6654444445******************** PP GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee..sgslvlgWkdrpLvsvSaWr 374 er+erhe+l++W +r+e aG++ v +s+ +++a+ ll+ + + y+v ++ ++++++W++rpL+svSaWr Pahal.H00061.1 414 ERKERHERLAQWARRMEGAGMERVGMSYGGMMEARKLLQSLGcGGSYEVVHDapGEAFFFCWHRRPLYSVSAWR 487 **************************************666699775466777**************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	49.407	14	464	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.0E-105	40	487	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MDIFPEDTVS SATSSLYSPS PHGYGSWVQE LSHDQQSVRL ISLLYQCAAE VAAGAFDRAN 60 HCLEQITQLA SLDAPHTLQR LAAVFADALA RKLLNLVPGL SRALLSTANS AEAHLIPAAR 120 RHLFDMLPFM KLAYLTSNHA ILEALEGEKF VHVVDLSGPA SNPVQWIALF HALRARRGGP 180 PHLRITAVHD GKEFLANMAG VLAKDAEALD IPFQFSAVEA RLDELDPDAL RQLLRVRSGE 240 ALAISVVAQL HRLLAADDAG RRHVPGSSCL TPVQIIARSS PSSFGELLER ELNTRLQLSP 300 DSSSVVSSLS PQSPVLQAAA AAQQQRPAAA KLGSFLQAVR ALSPKIMVVA EPEANHNAAA 360 FLERFEEALN YYASLFDCLE RASAAHRCAA ERARVERLVL GEEVRGVVAR EGAERKERHE 420 RLAQWARRME GAGMERVGMS YGGMMEARKL LQSLGCGGSY EVVHDAPGEA FFFCWHRRPL 480 YSVSAWRPAA GRHSGGRLVG S*

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MDIFPEDTVS SATSSLYSPS PHGYGSWVQE LSHDQQSVRL ISLLYQCAAE VAAGAFDRAN  60
HCLEQITQLA SLDAPHTLQR LAAVFADALA RKLLNLVPGL SRALLSTANS AEAHLIPAAR  120
RHLFDMLPFM KLAYLTSNHA ILEALEGEKF VHVVDLSGPA SNPVQWIALF HALRARRGGP  180
PHLRITAVHD GKEFLANMAG VLAKDAEALD IPFQFSAVEA RLDELDPDAL RQLLRVRSGE  240
ALAISVVAQL HRLLAADDAG RRHVPGSSCL TPVQIIARSS PSSFGELLER ELNTRLQLSP  300
DSSSVVSSLS PQSPVLQAAA AAQQQRPAAA KLGSFLQAVR ALSPKIMVVA EPEANHNAAA  360
FLERFEEALN YYASLFDCLE RASAAHRCAA ERARVERLVL GEEVRGVVAR EGAERKERHE  420
RLAQWARRME GAGMERVGMS YGGMMEARKL LQSLGCGGSY EVVHDAPGEA FFFCWHRRPL  480
YSVSAWRPAA GRHSGGRLVG S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-25	28	244	7	217	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827468.1	0.0	scarecrow-like protein 3
TrEMBL	A0A2S3ID03	0.0	A0A2S3ID03_9POAL; Uncharacterized protein
STRING	Pavir.Cb02147.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP604	38	176

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	1e-97	scarecrow-like 3

Link Out ? help Back to Top
Phytozome	Pahal.H00061.1