PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00059.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 435aa    MW: 48890.4 Da    PI: 8.9909
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00059.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS251.72.8e-777841278374
            GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
                      +a++ +  +sP++  +++t N+aIle++e e+         ++ +QW+ Ll+ +  R++gpp++R+T+v++    +++ l +++  L++ A++l
  Pahal.H00059.1  78 QTARCNLAILSPYISSGFVTINRAILESMEVEKV-------TMYNIQWLKLLHDFHRRQGGPPEVRLTVVHD----DNDYLANMRTLLSNEADKL 161
                     4566669999********************9987.......699****************************....9****************** PP

            GRAS 173 gvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll...........................................desvsl 220
                     ++pf+f+  v  rle+l++++L    ++k gEa+a++++lq+hrll                                           + + ++
  Pahal.H00059.1 162 KIPFQFSS-VIGRLETLDFSNLrntlDIKYGEAIAISCSLQMHRLLvvddkvscsgigqlqkmaniaqlkqmassvyspastlsypptpSPQCQT 255
                     ********.799999999988854447777*********************************************************98777788 PP

            GRAS 221 eserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl...preseerikvErellgreivnvvacegaerrerhetl 312
                     ++  d++L++v+ l+P+++ v+eq+a+hn+  F +rf+eal+yy+alfd+l+a +   pr ++er+ vEr++lg+ei+n++ ceg +r erhe+l
  Pahal.H00059.1 256 PNLLDSFLNAVRVLKPNIMLVMEQDANHNALLFCDRFVEALNYYAALFDCLNALVaanPRRADERARVERMVLGEEIKNILVCEGVHRHERHERL 350
                     88999**********************************************87761115566********************************* PP

            GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++W   ++++GF  vpls +a  + k  l  ++ +g + + es++l+l+W +r L+s+SaWr
  Pahal.H00059.1 351 SQWAIHMDRSGFDHVPLSFRAIWEGKQKLMSFGLNGCQSKVESDCLLLCWGSRHLYSISAWR 412
                     *************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.5221392IPR005202Transcription factor GRAS
PfamPF035149.7E-7578412IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MLIQTEGPGT RAPQRPRFPS RGQSPRQAAA MAPQRVRGRL PALLGGSDYT ARRLLCPIQG  60
FAGALIHPSD YFEQSVLQTA RCNLAILSPY ISSGFVTINR AILESMEVEK VTMYNIQWLK  120
LLHDFHRRQG GPPEVRLTVV HDDNDYLANM RTLLSNEADK LKIPFQFSSV IGRLETLDFS  180
NLRNTLDIKY GEAIAISCSL QMHRLLVVDD KVSCSGIGQL QKMANIAQLK QMASSVYSPA  240
STLSYPPTPS PQCQTPNLLD SFLNAVRVLK PNIMLVMEQD ANHNALLFCD RFVEALNYYA  300
ALFDCLNALV AANPRRADER ARVERMVLGE EIKNILVCEG VHRHERHERL SQWAIHMDRS  360
GFDHVPLSFR AIWEGKQKLM SFGLNGCQSK VESDCLLLCW GSRHLYSISA WRPHKGSASG  420
SREHMLVQPQ RRII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-214741248375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826866.10.0scarecrow-like protein 3
TrEMBLA0A2S3ICF90.0A0A2S3ICF9_9POAL; Uncharacterized protein
STRINGPavir.J24605.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-76scarecrow-like 3