PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00058.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 490aa    MW: 52682 Da    PI: 6.8484
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00058.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS291.81.8e-89184583374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlar.svselykal.ppsetseknsseelaalklfsevsPilkfs 94 
                     ++L ecA  v++g++e+a ++L+r   la+ ++  p+ Rla  ++  La+rl r +v+ ++ al  ps+    +   + aa++ f+e+sP++k +
  Pahal.H00058.1  18 RALCECAADVDAGSMEKAARCLSRATGLAAAARdGPLPRLAVPVADCLARRLIRpMVPAVAGALiDPSDH--LDRRCVRAARRSFFELSPFPKAA 110
                     689***********************996655538*******************7788887777333333..345566679999*********** PP

            GRAS  95 hltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                       + N+ Ilea+e+e+ vH+iD+   + q+ QW+ Ll+++ sRpeg+p+lR+T v++    + e l ++ e L++ A+el+vpf+ +  +a ++e
  Pahal.H00058.1 111 VAVGNRVILEAMENEKNVHVIDLAgpAAQPSQWIQLLREFHSRPEGAPHLRLTIVHD----DGEFLAKVSESLTDEADELDVPFQVHC-IAGQIE 200
                     ***********************65589*****************************....9**************************.6999** PP

            GRAS 188 dleleeL....rvkpgEalaVnlvlqlhrll................................................................ 214
                     +l+l++L     +k+gEa a+ +  +lhrll                                                                
  Pahal.H00058.1 201 TLDLNDLhgvlGLKSGEARAIVCTTRLHRLLaaaddaassslgaghhfnqmasiarlqqmasgscppsirgaacegdesysspatplgfispplt 295
                     **9999866557889*******************************************************************************9 PP

            GRAS 215 desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerr 306
                       + +++ +  ++L++ +  sPkvvv++eqea hn+ sF +rf+eal+yy+a +dsl+a +++      er+ vEr++lg+ei++v+  ega+rr
  Pahal.H00058.1 296 TPPFQMPPALASFLSAARAASPKVVVLAEQEAGHNGVSFRKRFAEALSYYAAAYDSLDAAAAAYRrpaAERAEVERAVLGEEIRDVLLREGARRR 390
                     666667777777*********************************************777554434559************************** PP

            GRAS 307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     erh +l++W  r+e aGF++vpls+ a  q    lr++++ g +  e+ g+l+l+W++ pL+svSaWr
  Pahal.H00058.1 391 ERHDRLHQWALRMEVAGFRSVPLSYAALRQGVDTLRRCGVGGCESREHGGCLLLCWRSWPLYSVSAWR 458
                     *******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.4561438IPR005202Transcription factor GRAS
PfamPF035146.3E-8718458IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MHPPPENGPA SRLAHLGRAL CECAADVDAG SMEKAARCLS RATGLAAAAR DGPLPRLAVP  60
VADCLARRLI RPMVPAVAGA LIDPSDHLDR RCVRAARRSF FELSPFPKAA VAVGNRVILE  120
AMENEKNVHV IDLAGPAAQP SQWIQLLREF HSRPEGAPHL RLTIVHDDGE FLAKVSESLT  180
DEADELDVPF QVHCIAGQIE TLDLNDLHGV LGLKSGEARA IVCTTRLHRL LAAADDAASS  240
SLGAGHHFNQ MASIARLQQM ASGSCPPSIR GAACEGDESY SSPATPLGFI SPPLTTPPFQ  300
MPPALASFLS AARAASPKVV VLAEQEAGHN GVSFRKRFAE ALSYYAAAYD SLDAAAAAYR  360
RPAAERAEVE RAVLGEEIRD VLLREGARRR ERHDRLHQWA LRMEVAGFRS VPLSYAALRQ  420
GVDTLRRCGV GGCESREHGG CLLLCWRSWP LYSVSAWRPD RGSAYGVGSE ELYLSPSAPP  480
AHCFEELMC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-16309458226375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827469.10.0scarecrow-like protein 3
TrEMBLA0A2S3ICA30.0A0A2S3ICA3_9POAL; Uncharacterized protein
STRINGSi028262m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.17e-57scarecrow-like 3