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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G02971.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 406aa MW: 44714.8 Da PI: 4.6895 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.3 | 6.5e-49 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtd el v+yLk+k+ gk+l++ ++i+e+d+yk+ PwdLp+ ++++++ wyfF++rd+ky++g r+nr+t gyWkatgkd++v+ Pahal.G02971.4 6 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAITEIDLYKFAPWDLPEkaSLESNDLVWYFFCPRDRKYSSGLRTNRSTGVGYWKATGKDRPVF 99 79****************************.89***************52355556669************************************ PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++++vg+k+tLvf+ g+ p+g +tdWvm eyrle Pahal.G02971.4 100 Y-NSRTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 134 *.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-60 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.156 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.3E-26 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MAKTSLPPGF RFHPTDVELT VYYLKRKLLG KHLRCNAITE IDLYKFAPWD LPEKASLESN 60 DLVWYFFCPR DRKYSSGLRT NRSTGVGYWK ATGKDRPVFY NSRTVGMKRT LVFHLGKPPR 120 GDRTDWVMYE YRLEDEELAA SGVKLDACVL CKIFQKSGPG PKIGAQYGAP FNEEDWNDAS 180 NVECSPFASS VAPCAPESSH GGLNSAGQHL AVSYDGKVSL APLSESNNEH TVNRVHPDRP 240 SPSIPVDSIH IQLLAEIIRC SSTNLLCTAA EDGSLPDSTA GYDNEDGESL DDIETIFCGV 300 DELASQPVVN NSNHCDSCEH LIHHMPEARG TEQYLELNDL FFSLAEGPDS SGMLLSNEIS 360 VEQPFDLEPR IERDSLDCIS NTVNTSTSTA DGPFPSVCAV DVHRT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-52 | 2 | 157 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823524.1 | 0.0 | NAC domain-containing protein 82-like | ||||
Refseq | XP_025823525.1 | 0.0 | NAC domain-containing protein 82-like | ||||
Refseq | XP_025823526.1 | 0.0 | NAC domain-containing protein 82-like | ||||
Refseq | XP_025823527.1 | 0.0 | NAC domain-containing protein 82-like | ||||
TrEMBL | A0A2S3IBX8 | 0.0 | A0A2S3IBX8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J14942.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 4e-81 | NAC domain containing protein 82 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G02971.4 |