PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02941.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 216aa    MW: 23142.1 Da    PI: 7.2538
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02941.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-1953103256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                     +y+G+r+++ +g+W+AeIrdp+    +  r++lg++ tae Aa+a+++a+++++g+
  Pahal.G02941.1  53 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARRIRGA 103
                     6********.**********75....44*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.7E-3253111IPR001471AP2/ERF domain
PROSITE profilePS5103224.48753110IPR001471AP2/ERF domain
SMARTSM003802.0E-3753116IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-2253111IPR016177DNA-binding domain
CDDcd000182.04E-1653112No hitNo description
PfamPF008471.1E-1254102IPR001471AP2/ERF domain
PRINTSPR003674.1E-115465IPR001471AP2/ERF domain
PRINTSPR003674.1E-117692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MCGGAIIFDY IPARRRVSAA DFWPDSEADA EDPHAPRASG ERAPRAKRCR KNQYRGIRQR  60
PWGKWAAEIR DPVKGVRVWL GTYPTAEAAA RAYDRAARRI RGAKAKVNFP NDTSSPVPVP  120
PAAAAAPPPA TAPAVLPAPK AEAGFSDEVK ELSEELMAYE NYMNFLGIPY MEGGSAAAPA  180
AAAVPAAAEE PQAPVPTGLW SFEDYYPASL SLFTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2253115568ATERF1
3gcc_A3e-2253115568ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9522801e-131EU952280.1 Zea mays clone 1275260 ethylene-responsive factor-like protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817800.11e-151ethylene-responsive transcription factor ERF071-like
TrEMBLA0A2T8IMM71e-150A0A2T8IMM7_9POAL; Uncharacterized protein
STRINGPavir.Eb02324.1.p1e-102(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.14e-29ERF family protein