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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G02941.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 216aa MW: 23142.1 Da PI: 7.2538 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2e-19 | 53 | 103 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+W+AeIrdp+ + r++lg++ tae Aa+a+++a+++++g+ Pahal.G02941.1 53 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARRIRGA 103 6********.**********75....44*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.7E-32 | 53 | 111 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.487 | 53 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-37 | 53 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-22 | 53 | 111 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.04E-16 | 53 | 112 | No hit | No description |
Pfam | PF00847 | 1.1E-12 | 54 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-11 | 54 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-11 | 76 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MCGGAIIFDY IPARRRVSAA DFWPDSEADA EDPHAPRASG ERAPRAKRCR KNQYRGIRQR 60 PWGKWAAEIR DPVKGVRVWL GTYPTAEAAA RAYDRAARRI RGAKAKVNFP NDTSSPVPVP 120 PAAAAAPPPA TAPAVLPAPK AEAGFSDEVK ELSEELMAYE NYMNFLGIPY MEGGSAAAPA 180 AAAVPAAAEE PQAPVPTGLW SFEDYYPASL SLFTE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-22 | 53 | 115 | 5 | 68 | ATERF1 |
3gcc_A | 3e-22 | 53 | 115 | 5 | 68 | ATERF1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU952280 | 1e-131 | EU952280.1 Zea mays clone 1275260 ethylene-responsive factor-like protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817800.1 | 1e-151 | ethylene-responsive transcription factor ERF071-like | ||||
TrEMBL | A0A2T8IMM7 | 1e-150 | A0A2T8IMM7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb02324.1.p | 1e-102 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11547 | 25 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 4e-29 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G02941.1 |