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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pahal.G02723.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
C3H |
| Protein Properties |
Length: 302aa MW: 31371.6 Da PI: 9.6838 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.G02723.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 25.5 | 2.3e-08 | 105 | 130 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+ C + Ck+Gd+C+FaH++
Pahal.G02723.1 105 KTRMCTKYNTAEGCKFGDKCHFAHSE 130
89**********************95 PP
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| 2 | zf-CCCH | 36.9 | 6.3e-12 | 268 | 293 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
ykt+lC +f + GtC +G+rC+FaHg+
Pahal.G02723.1 268 YKTKLCENFVK-GTCTFGERCHFAHGE 293
9**********.*************96 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 3.3E-7 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.324 | 37 | 65 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.1 | 37 | 64 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.75E-5 | 38 | 62 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF14608 | 1.5 | 45 | 62 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 1.1E-13 | 101 | 135 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.27E-8 | 102 | 134 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.14 | 103 | 130 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.638 | 103 | 131 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 7.7E-5 | 105 | 130 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00322 | 9.4E-11 | 171 | 241 | IPR004087 | K Homology domain |
| Gene3D | G3DSA:3.30.1370.10 | 4.5E-15 | 171 | 241 | IPR004088 | K Homology domain, type 1 |
| PROSITE profile | PS50084 | 14.257 | 172 | 236 | IPR004088 | K Homology domain, type 1 |
| SuperFamily | SSF54791 | 8.77E-15 | 174 | 265 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 7.2E-11 | 174 | 237 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 3.99E-14 | 174 | 236 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 5.4E-15 | 266 | 297 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.62E-9 | 266 | 297 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.0E-8 | 267 | 293 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 17.384 | 267 | 294 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.3E-9 | 268 | 293 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MEGAAAARKR SRPETANGAA AGGKRSKEME SFQTGQSSKS KPCTKFFSTI GCPFGEGCHF 60
LHFVPGGYPA VAKMLNLGSP VVSAPARAPA DHAAVANSHP ASMAKTRMCT KYNTAEGCKF 120
GDKCHFAHSE RELGKPAYMS HEAPPMGGRF GGRPEPPPPV AMGPPAGNFG ASATAKISVD 180
ASLAGGIIGK GGVNTKQICR VTGVKLSIRD HESDPNLKNI ELEGNFDQIK QASNMVSDLI 240
ATISASMPPK NPAPAGGRGG APGGRSNYKT KLCENFVKGT CTFGERCHFA HGEDEQRRGA 300
A*
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