PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02681.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 705aa    MW: 76905.6 Da    PI: 6.2933
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02681.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.9e-211772156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ +++t+ q+++Le++F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k
  Pahal.G02681.1 17 KKRYHRHTPRQIQQLEAMFKECPHPDENQRMQLSRELGLEPRQIKFWFQNRRTQMK 72
                    688999***********************************************998 PP
2START149.72.6e-472154432206
                     HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                     +a +a++el+++a+a+e++W +       e +n d++ ++f++ ++       ++e +r+sg+v+m ++ lv  ++d++ +W e ++     a t
  Pahal.G02681.1 215 MATRAMDELIRMAQAGEQLWARTGgpdgrEVLNVDTYDSIFSKPGSsfrgpdVHVEGSRDSGLVFMSAVGLVDMFMDSS-KWMEFFPaivsNART 308
                     5789*******************9999999999999999997766699*******************************.**********9**** PP

                     EEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
           START  82 levissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwv 167
                     ++v+ +g     + l+lm+ el ++sp+vp R+  f+Ry+rq + g w+++dvSvd +         ++  R+ +lpSg+li +++ng+skvtwv
  Pahal.G02681.1 309 IDVLVNGmagrsESLVLMYEELHVMSPVVPtRELCFLRYCRQIEHGLWAVADVSVDLQPRDARfgaPPQPPRSCRLPSGCLIADMANGYSKVTWV 403
                     *******************************************************9765444446677888999********************* PP

                     E-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 168 ehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     eh+++++r+p h l+r l+ sg+a+ga +w+a+lqr ce+
  Pahal.G02681.1 404 EHMEVEDRVPiHLLYRDLILSGAAFGAHRWLAALQRACER 443
                     **************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.63E-20674IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-221180IPR009057Homeodomain-like
PROSITE profilePS5007117.8151474IPR001356Homeobox domain
SMARTSM003891.6E-191578IPR001356Homeobox domain
CDDcd000861.24E-191675No hitNo description
PfamPF000462.0E-181772IPR001356Homeobox domain
PROSITE patternPS0002704972IPR017970Homeobox, conserved site
PROSITE profilePS5084844.966205446IPR002913START domain
SuperFamilySSF559611.48E-31206444No hitNo description
CDDcd088753.43E-108209442No hitNo description
SMARTSM002344.3E-36214443IPR002913START domain
PfamPF018521.6E-39215443IPR002913START domain
Gene3DG3DSA:3.30.530.205.9E-5322413IPR023393START-like domain
SuperFamilySSF559615.63E-20461696No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009828Biological Processplant-type cell wall loosening
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MDFGDDVMDG SDGQHRKKRY HRHTPRQIQQ LEAMFKECPH PDENQRMQLS RELGLEPRQI  60
KFWFQNRRTQ MKAQHERQDN CFLRAENDKI RCENIAMREA LRNVICPTCG GPPVADDYFD  120
EQKLRMENAR LKEELDRVSS LTSKYLGRPF TQLPPVQPLS MSSSLDLSVG GLGSPALGPS  180
LDLDLLSGGS SGYHHPAFHL PTAVSEMERP MMAEMATRAM DELIRMAQAG EQLWARTGGP  240
DGREVLNVDT YDSIFSKPGS SFRGPDVHVE GSRDSGLVFM SAVGLVDMFM DSSKWMEFFP  300
AIVSNARTID VLVNGMAGRS ESLVLMYEEL HVMSPVVPTR ELCFLRYCRQ IEHGLWAVAD  360
VSVDLQPRDA RFGAPPQPPR SCRLPSGCLI ADMANGYSKV TWVEHMEVED RVPIHLLYRD  420
LILSGAAFGA HRWLAALQRA CERCACLATA GMPPRDIAGV TPEGNRSMMK LSQRMVSGFC  480
ASLSASQLHR WTTLSGPNDV GVRVMVHRST DPGQPSGVVL SAATSIWLPV PCDRVFAFIC  540
DENTRSQWDV LSHGNPVQEV SRIPNGSHPG NCISLLRGLN ASQNSMLILQ ESCTDASGSL  600
VVYAPIDIPA ANVVMSGEDP SAIPLLPSGF TILPDGRPGA SPSSSSSAGP LGSPPAGSLV  660
TVAFQILVSS LPSSKLNAES VATVNSLIST TVEQIKAALN CASH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00232DAPTransfer from AT1G73360Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7285230.0KJ728523.1 Zea mays clone pUT6828 HB transcription factor (HB83) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828617.10.0homeobox-leucine zipper protein ROC8-like
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A2S3GTP70.0A0A2S3GTP7_9POAL; Uncharacterized protein
STRINGSi016483m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11