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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.G02613.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
SBP |
Protein Properties |
Length: 388aa MW: 42234.8 Da PI: 7.4859 |
Description |
SBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.G02613.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SBP | 128.8 | 2.1e-40 | 163 | 241 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
+Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++
Pahal.G02613.1 163 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 241
6******************************98725689*************************************975 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 388 aa
Download sequence Send
to blast |
MMNLSAAANA CDEFPYVASN PAPPSLLPIM EQESSIQREQ LGYNLEASSL ALLPPSNAAA 60 AAAGGHHHAT IAGHSPHDIL QFYPSSHYLA ASGNPYSHFS GGTFQSYYPQ AAQAAPEYYF 120 PTLVSSAEEN MASFAATQLG LNLGYRTYFP PRGGYTYGHH PPRCQAEGCK ADLSSAKRYH 180 RRHKVCEHHS KAPVVVTAGG LHQRFCQQCS RFHLLDEFDD AKKSCRKRLA DHNRRRRKSK 240 PSDADAGDKK RAHWNKAAAA KDKAGSSSKN MDIGDGLGTQ ILGSALLSED QDQAMDLGEV 300 VKEAVDPKGK ASMPQHHGIH HQQNHHGFPF HSSSAGSCFP QTQAMSGDTT SNIAQVQEPS 360 LAFHHQHHQH SNILQLGQAM FDLDFEH*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 233 | 250 | RRRRKSKPSDADAGDKKR |
2 | 234 | 239 | RRRKSK |
Functional Description ? help
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Source |
Description |
UniProt | Involved in the formation of ligules and auricles during leaf organogenesis. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | ZMU89496 | 0.0 | U89496.1 Zea mays liguleless1 protein (liguleless1) mRNA, complete cds. |