PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G02547.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 245aa MW: 26332.5 Da PI: 10.4321 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.7 | 1e-16 | 68 | 117 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g+WvAeIr+p + r+r++lg++ t+ Aa+a++ a +l+g Pahal.G02547.1 68 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATPVAAARAYDTAVFYLRG 117 69*****99.**********732...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-30 | 67 | 126 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.71E-25 | 68 | 126 | No hit | No description |
PROSITE profile | PS51032 | 22.589 | 68 | 125 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-36 | 68 | 131 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-10 | 68 | 117 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 68 | 127 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.4E-12 | 69 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-12 | 107 | 127 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MQGAYRSSSE ESAASPAASA AAAAAAAAMA PLAAAAAAAV KMEEQAAAAL AAGAQAPAPL 60 QQMQLRRQYR GVRMRKWGKW VAEIREPHKR TRIWLGSYAT PVAAARAYDT AVFYLRGRSA 120 RLNFPDEIPA LALAEGDGDP ARGGEPDGGT LSAASIRKKA IEVGLRVDAL QTGMMVAPPH 180 PRERQRHHHH HHHHHGHGLP QLQLHAEDEH RRQEQKQQQR AAWSGRAKNP DLNRAPSPES 240 SDAE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-14 | 67 | 128 | 4 | 66 | ATERF1 |
3gcc_A | 6e-14 | 67 | 128 | 4 | 66 | ATERF1 |
5wx9_A | 8e-14 | 68 | 127 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00276 | DAP | Transfer from AT2G23340 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU966906 | 1e-145 | EU966906.1 Zea mays clone 298090 dehydration responsive element binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826193.1 | 1e-173 | ethylene-responsive transcription factor RAP2-10-like | ||||
TrEMBL | A0A2S3IAZ3 | 1e-171 | A0A2S3IAZ3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J27349.1.p | 1e-105 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3943 | 30 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23340.1 | 1e-42 | DREB and EAR motif protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G02547.1 |