PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G02264.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 460aa MW: 50947.4 Da PI: 6.9847

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G02264.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	25.1	4.8e-08	280	339	66	127
NAM 66 kkyatgkrknr.atksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127 kk ++ + ++ k+gyWk++ ++k++ + +++ +g+k+tL f + g++t+W+ +ey Pahal.G02264.1 280 KKDKKADDDKKdEKKAGYWKEK-ETKAIRDPsaSRNIIGMKRTLEFM----NGGKRTRWLADEYV 339 2222222222224679**76.45888877667888*****9....56889*****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02365	4.1E-6	240	339	IPR003441	NAC domain
SuperFamily	SSF101941	4.84E-8	289	362	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MANHGKETNQ SMSNLLLPSS HPHPTVGNPG DDQSMSNLLL PSSHPHPTVG NPGDDQSMSD 60 PLWTSSHPHS THGGPEDDQF MGVDDWYGMS IDIPSPSEIL MEGIPSPGLA ADAAAVAEIG 120 EPASGSLGEN SLLTSAAVAN KLPPARHRQH RGEKHYMELY DRTFFDVSTS TARAMRITAA 180 LDDDGIHGSH PAQGLLQPEQ VKTRVQILAL IKKKYKMGIR YEEEAELIRL MTIQFKKEKS 240 ISNDRIDYLA DPFEPPTSKQ CYFTRFMAML FDNKKADDDK KDKKADDDKK DEKKAGYWKE 300 KETKAIRDPS ASRNIIGMKR TLEFMNGGKR TRWLADEYVA LEPWGHDAVH ILGDIAVRRV 360 YEEGKETAPP SKCSKTGAHS SGESYIWQHM TRVYAGSTEA PSLLYGICHE CDKALKCPPN 420 FGNGNLNKHL ARVHDIHPPC KNQCVMTNEK GVGRRAVRV*

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MANHGKETNQ SMSNLLLPSS HPHPTVGNPG DDQSMSNLLL PSSHPHPTVG NPGDDQSMSD  60
PLWTSSHPHS THGGPEDDQF MGVDDWYGMS IDIPSPSEIL MEGIPSPGLA ADAAAVAEIG  120
EPASGSLGEN SLLTSAAVAN KLPPARHRQH RGEKHYMELY DRTFFDVSTS TARAMRITAA  180
LDDDGIHGSH PAQGLLQPEQ VKTRVQILAL IKKKYKMGIR YEEEAELIRL MTIQFKKEKS  240
ISNDRIDYLA DPFEPPTSKQ CYFTRFMAML FDNKKADDDK KDKKADDDKK DEKKAGYWKE  300
KETKAIRDPS ASRNIIGMKR TLEFMNGGKR TRWLADEYVA LEPWGHDAVH ILGDIAVRRV  360
YEEGKETAPP SKCSKTGAHS SGESYIWQHM TRVYAGSTEA PSLLYGICHE CDKALKCPPN  420
FGNGNLNKHL ARVHDIHPPC KNQCVMTNEK GVGRRAVRV*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823002.1	0.0	uncharacterized protein LOC112898906
Refseq	XP_025823003.1	0.0	uncharacterized protein LOC112898906
TrEMBL	A0A2S3IAG7	0.0	A0A2S3IAG7_9POAL; Uncharacterized protein
STRING	Pavir.Ga00435.1.p	1e-105	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Pahal.G02264.1