PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02195.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 272aa    MW: 31824.4 Da    PI: 7.5141
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02195.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.11.2e-2318100186
        trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W  qe+++Li+ar e+e++  + ++++k+ We+v+ ++rerg++r++ qCk+kw+nl +ryk  ++++ ++     ++cp+f++l+
  Pahal.G02195.1  18 QWGAQETRELIAARGEVEREADAaRRSAKTMWEAVAVRLRERGYRRTADQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFEELH 100
                     7********************9735799************************************99999974....678******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122032.13E-161783No hitNo description
PfamPF138379.6E-2218101No hitNo description
PROSITE profilePS500907.2821976IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MMEAGGGGAG GRDERVPQWG AQETRELIAA RGEVEREADA ARRSAKTMWE AVAVRLRERG  60
YRRTADQCKC KWKNLVNRYK GKETSDPENG RQCPFFEELH AVFTERARNM QRQLLESESG  120
AFDKRKLKRP SGDRSSGESD GEDDGGEESE DEKPMHSRKR KADDKKQQSQ RMPEKSRSGV  180
SSIHELLQDF LTQQQRIDIQ WQETMERRAQ ERVAFEQEWR QTMQKLEQER LMLEHSWIQR  240
EEQRRMREEA RAEKRDALLT TLLNKLLQDD L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122129DKRKLKRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824197.10.0uncharacterized protein LOC112899804
TrEMBLA0A2T7CZK30.0A0A2T7CZK3_9POAL; Uncharacterized protein
STRINGPavir.J40572.1.p1e-159(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106883037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.16e-29Trihelix family protein