 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.G02123.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
bHLH |
| Protein Properties |
Length: 331aa MW: 35176.6 Da PI: 6.6326 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.G02123.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 42 | 1.7e-13 | 88 | 139 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+++N+ ++ Lr+l+P++ + + + a+i+ A++++k+L+
Pahal.G02123.1 88 QRMTHIAVERNRRRQMNEYLAVLRSLMPES---YVHRSDQASIVSGAIDFVKELE 139
79****************************...9******************995 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MTLEALCAPS TSSDVLVYDT FNAAAAACAA ASPGTGSFLF GNAPAVEPFP APAAPPDAEG 60
ENRVQQQGRR KRRRRQRTVK NAEDAESQRM THIAVERNRR RQMNEYLAVL RSLMPESYVH 120
RSDQASIVSG AIDFVKELEQ QVQSLEAQKL ALQPQRGGTA SERDAARAPP RDPVAASSSS 180
ASVTGEAAER PPFARFFRYP QYAWRHTPPQ EDGAAAVGAE EASRASAVAD VEVSVVVDAH 240
ASLRVMARRR PGQLLKMVAG MQALGLAVLH LNVTAAPGEL ALYTLNLKVE EGCGLTTAED 300
IAAAAHHVLC IIDAEAAQRL LAPGAGQPDL *
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 67 | 75 | GRRKRRRRQ |
| 2 | 68 | 74 | RRKRRRR |
| 3 | 69 | 73 | RKRRR |
| 4 | 69 | 76 | RKRRRRQR |
| 5 | 88 | 99 | RMTHIAVERNRR |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT061323 | 1e-102 | BT061323.1 Zea mays full-length cDNA clone ZM_BFb0135D07 mRNA, complete cds. |
