PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01890.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 507aa    MW: 54213.8 Da    PI: 9.1987
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01890.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.34.9e-26201653127
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratk..sgyWk.atgkdkev 92 
                      GfrF+Pt  elv++yL +k+ +k++  ++++ e+d y+++P+ L k++++   +++wyf s+r+++y+ g+r++r t+  +g+Wk +tg++k+ 
  Pahal.G01890.1  20 LGFRFKPTLRELVDFYLLPKLLDKPTVPNDAVIEADAYECDPEILTKRYEErgADDNWYFLSPRSRRYPGGDRPTRRTAdnRGRWKpSTGQSKPG 114
                     6************************88879999************97555532566*****************999655459****889999998 PP

             NAM  93 lsk.....kgel.............vglkktLvfykgrapkgektdWvmheyr 127
                     ++      k  +             + + +tL++y g+ ++ +kt+W+mhe +
  Pahal.G01890.1 115 KKGaaghsK--AnkgprknlsvgavKFTENTLAYYAGEPKNETKTKWLMHELT 165
                     876665441..1556677778777688899*********************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-2917200IPR003441NAC domain
PROSITE profilePS5100532.43418200IPR003441NAC domain
PfamPF023651.8E-1521165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MAGVERPSGG GDDKEDNYTL GFRFKPTLRE LVDFYLLPKL LDKPTVPNDA VIEADAYECD  60
PEILTKRYEE RGADDNWYFL SPRSRRYPGG DRPTRRTADN RGRWKPSTGQ SKPGKKGAAG  120
HSKANKGPRK NLSVGAVKFT ENTLAYYAGE PKNETKTKWL MHELTVPEPG KERALKSATR  180
EKPRDHMLLN KYVMCRIYKS PLKKWRELED EEGSNSSAPA CDEEAPTSSQ PGPAPESVAE  240
TSSPRATSSK SAGKRPAVVQ PSRHANAPNK RVSSRQNLPP GPPRPTKHAN GGGGMRAPPA  300
GVGAAGYYHG VPGLPPLMQW PPPPMYTSMQ GPVQLQRPPL TNGPHGQGPP VLRLCPPHRA  360
AAATVPNSLG RTAMMPELKS QQGSASFAGQ QHVRPAASTQ PACFEEGANL DHPAGAQAMV  420
PCTQFPVPLN FYPCSGVQQQ QSSPAIPAAS AAGPVDVEAT PAADDAPGKL AVPGDANEGS  480
AKGDCYGYSN QLFEEFLAGD SGHVKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-152119920164NO APICAL MERISTEM PROTEIN
1ut4_B2e-152119920164NO APICAL MERISTEM PROTEIN
1ut7_A2e-152119920164NO APICAL MERISTEM PROTEIN
1ut7_B2e-152119920164NO APICAL MERISTEM PROTEIN
4dul_A2e-152119920164NAC domain-containing protein 19
4dul_B2e-152119920164NAC domain-containing protein 19
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5423111e-31AY542311.1 Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier, hypothetical protein, putative NAM protein, putative cis-zeatin O-glucosyltransferases, putative small nuclear ribonucleoprotein, putative cis-zeatin O-glucosyltransferase, putative glutathione peroxidase, putative copper-exporting ATPases, putative serine/threonine dehydratase, and putative actin depolymerizing factor genes, complete cds; and hypothetical protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823986.10.0NAC domain-containing protein 22-like
TrEMBLA0A2T7CYH20.0A0A2T7CYH2_9POAL; Uncharacterized protein
STRINGPavir.Gb01143.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1936857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-22NAC-like, activated by AP3/PI