PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01873.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 697aa    MW: 73018.8 Da    PI: 5.6611
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01873.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS154.68.8e-483635893237
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + L ++A+a + g+   a+++Larl+++  p g+p+ R a+yf+eAL   l++      +  +++ ts+ +++ +laa+k fs++sP+l+f+++t
  Pahal.G01873.1 363 DELAAAAKAAEVGNSIGAREILARLNQQLPPIGKPFLRSASYFKEALLLALTD-----GHHDSTRLTSPLDVALKLAAYKSFSDLSPVLQFANFT 452
                     7899************************************************9.....44446666777779*********************** PP

            GRAS  98 aNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     a qa+l++++    +++ +iDfd++ G+QW+++lq+La R+     + p+l++T+++s +s++  el+ t+++L++fA+ lg+pfefn++   +l
  Pahal.G01873.1 453 ATQALLDEIACTtaSCIRVIDFDLGVGGQWASFLQELAHRRgtgnVSLPMLKLTAFVSTASHHPLELHLTRDNLSQFAADLGIPFEFNAI---NL 544
                     *******87755559*************************97655569*****************************************9...9* PP

            GRAS 187 edleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237
                     +++++ eL   + +E +aV+l +          +l+     +L+lvk+lsPk
  Pahal.G01873.1 545 DAFDPAELIAPTaDELVAVCLPVGCSART---PPLPM----LLQLVKQLSPK 589
                     *****99966668********99666554...56666....**********8 PP
2GRAS798.2e-25591695264374
            GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                     ++ l+dsl+a  ++++++++k+Er+l++++++++v  + ++     e+ + Wr+ +++aGF p+pls+ a++qa++ll++v+++g++ve+    l
  Pahal.G01873.1 591 CMFLLDSLDAA-GTDADAASKIERFLIQPRVEDAVLGRRRA-----EKPMAWRAVFTSAGFAPIPLSNLAEAQADCLLKRVQVRGFHVEKCGMGL 679
                     6789****999.8999*******************976665.....9999********************************************* PP

            GRAS 359 vlgWkdrpLvsvSaWr 374
                      l+W++ +LvsvSaWr
  Pahal.G01873.1 680 ALYWQRGELVSVSAWR 695
                     ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.444335675IPR005202Transcription factor GRAS
PfamPF035143.0E-45363589IPR005202Transcription factor GRAS
PfamPF035142.8E-22591695IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MRAAPFSAEG NGAGTIEALL WPEGKGGGAG GRGGEDLLLV EPTSVLDCRR SPSPPYSTST  60
LSSSLGGAAG DSSSGVAAVS ENSAAAAEAT KWAAPGEHGG GGGRKEEWAG GELPPIPGTL  120
DVGFGGEEGW DAMLGDAAAA VGQEQTFLNW IMTAPGEMEP PPPPLQHHHQ LLGNAAGFGF  180
PASDPLGFSL QRHPGGGASG ALASDLSSPG ARSLTSSSGS SSKATSTFGL LPTEAPLQTP  240
TTTTMPFHDG ADIKPPLLGV PSASASLLLN QHQPSPAASF FMPLPSFPDH QHQPHLPQPP  300
KRHNSMPDNL FLLQNQLQPP PQQGLPFPPL HTTAPFQLQP SLQPPGGAMK TTAAAQQQQQ  360
LLDELAAAAK AAEVGNSIGA REILARLNQQ LPPIGKPFLR SASYFKEALL LALTDGHHDS  420
TRLTSPLDVA LKLAAYKSFS DLSPVLQFAN FTATQALLDE IACTTASCIR VIDFDLGVGG  480
QWASFLQELA HRRGTGNVSL PMLKLTAFVS TASHHPLELH LTRDNLSQFA ADLGIPFEFN  540
AINLDAFDPA ELIAPTADEL VAVCLPVGCS ARTPPLPMLL QLVKQLSPKS CMFLLDSLDA  600
AGTDADAASK IERFLIQPRV EDAVLGRRRA EKPMAWRAVF TSAGFAPIPL SNLAEAQADC  660
LLKRVQVRGF HVEKCGMGLA LYWQRGELVS VSAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-1536969426377Protein SCARECROW
5b3h_D5e-1536969426377Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0634500.0BT063450.1 Zea mays full-length cDNA clone ZM_BFc0064F13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824521.10.0scarecrow-like protein 6
TrEMBLA0A2T7CYF10.0A0A2T7CYF1_9POAL; Uncharacterized protein
STRINGPavir.Ga01057.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.13e-80GRAS family protein