PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01842.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 377aa    MW: 38439 Da    PI: 10.4501
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01842.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.33.4e-41101177177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +CqvegC+a+l+ ak+yhrrhkvCe+hskap v+v g eqrfCqqCsrfh++sefD++krsCrrrLa+hnerrrk++
  Pahal.G01842.1 101 RCQVEGCHAELAGAKDYHRRHKVCEAHSKAPRVVVLGAEQRFCQQCSRFHAVSEFDDAKRSCRRRLAGHNERRRKSN 177
                     6**************************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.2E-3596163IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.71899176IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-38100179IPR004333Transcription factor, SBP-box
PfamPF031103.1E-32102175IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MHWAPTGSSP PYPQQPLVAR PGVGAASHYH QQQQELTCLK LGKRPCCWAG AAATPAAQAG  60
TAGLPPQVHG NGAAAAGGAS GAAAEGRRKE KAAAATAAAP RCQVEGCHAE LAGAKDYHRR  120
HKVCEAHSKA PRVVVLGAEQ RFCQQCSRFH AVSEFDDAKR SCRRRLAGHN ERRRKSNASE  180
AMARGAAHPH GFGHGFLPPR GLPAGALSLL SSARGAGAPW LVPAPDISAR SSAALDELIA  240
ENRAALLAWQ FFDRSAPSRH HLAPPSSAGR APPPPDHQAP GWPSPHHPHN GAGAGGGGRY  300
FHAAPASAGH TTLDLMQLAA GAAATTAAPA GAPPFRPVPE RVGAAARPPR TKDNGDASGC  360
SSDAWAPAGG GGARAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-311021751184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9646561e-118EU964656.1 Zea mays clone 280651 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824676.10.0squamosa promoter-binding-like protein 7
SwissprotQ7XT421e-112SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBLA0A2T8IDB80.0A0A2T8IDB8_9POAL; Uncharacterized protein
STRINGPavir.Ga01083.1.p1e-155(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103033439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-35SBP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]