PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

SBP

Protein Properties

Length: 377aa MW: 38439 Da PI: 10.4501

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G01842.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.3	3.4e-41	101	177	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC+a+l+ ak+yhrrhkvCe+hskap v+v g eqrfCqqCsrfh++sefD++krsCrrrLa+hnerrrk++ Pahal.G01842.1 101 RCQVEGCHAELAGAKDYHRRHKVCEAHSKAPRVVVLGAEQRFCQQCSRFHAVSEFDDAKRSCRRRLAGHNERRRKSN 177 6**************************************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.2E-35	96	163	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.718	99	176	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.44E-38	100	179	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.1E-32	102	175	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MHWAPTGSSP PYPQQPLVAR PGVGAASHYH QQQQELTCLK LGKRPCCWAG AAATPAAQAG 60 TAGLPPQVHG NGAAAAGGAS GAAAEGRRKE KAAAATAAAP RCQVEGCHAE LAGAKDYHRR 120 HKVCEAHSKA PRVVVLGAEQ RFCQQCSRFH AVSEFDDAKR SCRRRLAGHN ERRRKSNASE 180 AMARGAAHPH GFGHGFLPPR GLPAGALSLL SSARGAGAPW LVPAPDISAR SSAALDELIA 240 ENRAALLAWQ FFDRSAPSRH HLAPPSSAGR APPPPDHQAP GWPSPHHPHN GAGAGGGGRY 300 FHAAPASAGH TTLDLMQLAA GAAATTAAPA GAPPFRPVPE RVGAAARPPR TKDNGDASGC 360 SSDAWAPAGG GGARAL*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MHWAPTGSSP PYPQQPLVAR PGVGAASHYH QQQQELTCLK LGKRPCCWAG AAATPAAQAG  60
TAGLPPQVHG NGAAAAGGAS GAAAEGRRKE KAAAATAAAP RCQVEGCHAE LAGAKDYHRR  120
HKVCEAHSKA PRVVVLGAEQ RFCQQCSRFH AVSEFDDAKR SCRRRLAGHN ERRRKSNASE  180
AMARGAAHPH GFGHGFLPPR GLPAGALSLL SSARGAGAPW LVPAPDISAR SSAALDELIA  240
ENRAALLAWQ FFDRSAPSRH HLAPPSSAGR APPPPDHQAP GWPSPHHPHN GAGAGGGGRY  300
FHAAPASAGH TTLDLMQLAA GAAATTAAPA GAPPFRPVPE RVGAAARPPR TKDNGDASGC  360
SSDAWAPAGG GGARAL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-31	102	175	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU964656	1e-118	EU964656.1 Zea mays clone 280651 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824676.1	0.0	squamosa promoter-binding-like protein 7
Swissprot	Q7XT42	1e-112	SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBL	A0A2T8IDB8	0.0	A0A2T8IDB8_9POAL; Uncharacterized protein
STRING	Pavir.Ga01083.1.p	1e-155	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10303	34	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	1e-35	SBP family protein

Link Out ? help Back to Top
Phytozome	Pahal.G01842.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]