PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01833.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 216aa    MW: 22853.2 Da    PI: 6.026
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01833.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-184493255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Pahal.G01833.1 44 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 93
                    69****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.2E-3744107IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2144102IPR016177DNA-binding domain
PfamPF008471.8E-124493IPR001471AP2/ERF domain
PROSITE profilePS5103222.91944101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-3244103IPR001471AP2/ERF domain
PRINTSPR003679.2E-114556IPR001471AP2/ERF domain
CDDcd000181.88E-3045103No hitNo description
PRINTSPR003679.2E-116783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDTDDTHEPA SPTSASSSSS SSSGPSSSQA PKKRARQDGR RHPTYRGVRM RSWGKWVSEI  60
REPRKKSRIW LGTFATAEMA ARAHDVAALA IKGRGAHLNF PEQAHLLPRP ASASPKDVQA  120
AATLAAAADF PAPPPPPSTS RGGANAKSPE SSSSDDASRE PAPQDAGPDP DETLFDLPDL  180
LMDLRCCGPS SWAVDDDVAG GGAFRLIEEP LLWEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1835106577Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13036PKKRARQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9653061e-126EU965306.1 Zea mays clone 285154 dehydration-responsive element-binding protein 1C mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824789.11e-152ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ71e-47ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2S3I9351e-151A0A2S3I935_9POAL; Uncharacterized protein
STRINGPavir.Ga01093.1.p3e-91(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.16e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]