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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G01813.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 344aa MW: 36062.5 Da PI: 4.8323 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 7.7e-20 | 151 | 201 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+++AeIrdp+ +g r++lg+++t+ eAa+a+++a+ +++g+ Pahal.G01813.1 151 YRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 201 9*******.**********96554..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.18E-22 | 150 | 209 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-32 | 150 | 209 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-36 | 150 | 214 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.012 | 150 | 208 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.32E-29 | 151 | 209 | No hit | No description |
PRINTS | PR00367 | 1.8E-13 | 151 | 162 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.1E-14 | 151 | 200 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-13 | 190 | 210 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MAFTGDADGF ALDFIREHLL GGGCGGVAAA DSPVVSDDVN VPELPPQPEF EPMSFLPPRQ 60 EQHHQGFMGM DDLMTDEYMG GAPAVGEAAA FPEQVPAAPV IIKFGSERSP AVRQPLTIAV 120 PPSSFAWAGA ASAATPAAPA AAAVVEDFRM YRGVRQRPWG KYAAEIRDPK RRGSRVWLGT 180 YDTPVEAARA YDRAAFRMRG AKAILNFPNE VGTRDADFLA SPPAPATKAA AATSKRKRKQ 240 LENSDDVEVV AVVNKAVKVD APSSSSTQVS SSTSPSSMST RETTASSTVT STTAETGAGA 300 EWLPMTPSSG SCEQYWEALL GGLPPLSPLS PIPTLGFPQL PVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-26 | 149 | 213 | 4 | 68 | ATERF1 |
3gcc_A | 5e-26 | 149 | 213 | 4 | 68 | ATERF1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727525 | 1e-116 | KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826258.1 | 0.0 | ethylene-responsive transcription factor 6-like | ||||
TrEMBL | A0A2S3I916 | 0.0 | A0A2S3I916_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb00971.1.p | 1e-143 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 4e-32 | ethylene responsive element binding factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G01813.1 |