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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G01812.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 322aa MW: 34433.6 Da PI: 6.1467 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 3.8e-20 | 138 | 189 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+ +g r++lg+++t+ eAa+a+++a+ +++g+ Pahal.G01812.1 138 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 189 8********.**********96554..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.6E-32 | 137 | 197 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-14 | 138 | 188 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-37 | 138 | 202 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.105 | 138 | 196 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.75E-30 | 138 | 197 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-23 | 138 | 197 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.6E-13 | 139 | 150 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-13 | 178 | 198 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MDFAADSDGF ALDFIREHLL DGGCGGVPVP VGSTGVPDDV TFPMLQPQPE FQPMSSFLPP 60 PLQQGYTHLT HEYKGAAPAA AAAASRAQYE LSATVMIKFG SEPSSPVRPA LTITVPPSSY 120 AWAESVTAAA AVDDDFRKYR GVRQRPWGKY AAEIRDPKRR GSRVWLGTYD TPVEAARAYD 180 RAAFRMRGAK AILNFPNEVG TRGADLWAPP QPPAATQAAP ANKRKRQQEE RDVEVLAVIN 240 KAVKIEMPSS SSTWPSSMST RETTASASST VTSTTTEAAG AGADWLPVTP SSGSWDQYWD 300 LGGLPPLSPH PAMGFPQLTV N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-26 | 137 | 201 | 4 | 68 | ATERF1 |
3gcc_A | 6e-26 | 137 | 201 | 4 | 68 | ATERF1 |
5wx9_A | 8e-26 | 138 | 198 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727525 | 1e-104 | KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825916.1 | 0.0 | ethylene-responsive transcription factor ERF105-like | ||||
TrEMBL | A0A2S3I904 | 0.0 | A0A2S3I904_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J21804.1.p | 1e-165 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 1e-36 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G01812.1 |