PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G01792.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 181aa MW: 19343.1 Da PI: 9.0091 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 36.2 | 1.2e-11 | 151 | 179 | 1 | 29 |
---SS-EEEEEEE--TT-SS-EEEEEE-S CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCts 29 ldDgy+WrKYGqK+vk+s +p rC+s Pahal.G01792.2 151 LDDGYKWRKYGQKVVKNSLHPSCVRRCSS 179 59*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-13 | 136 | 179 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.41E-11 | 143 | 179 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.779 | 146 | 180 | IPR003657 | WRKY domain |
SMART | SM00774 | 0.002 | 151 | 180 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-8 | 152 | 179 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MEGSSQFETC LPSLFSLGAL PPPLAPLPNQ HKLLQMPLFQ EQGGTYGVML SSDHHGGLYP 60 LLLPGIPFCN SSAGAGEKPT GFAVLDAGEA GTLAAKAAGE IPSTTTATFH GSSSWWKGSA 120 AEAGEKGRMK VRRKMREPRF CFQTRSDVDV LDDGYKWRKY GQKVVKNSLH PSCVRRCSSA 180 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 134 | GRMKVRRKM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00618 | PBM | Transfer from AT2G44745 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067982 | 1e-59 | BT067982.1 Zea mays full-length cDNA clone ZM_BFb0009G22 mRNA, complete cds. | |||
GenBank | BT068156 | 1e-59 | BT068156.2 Zea mays full-length cDNA clone ZM_BFb0072A01 mRNA, complete cds. | |||
GenBank | EU972805 | 1e-59 | EU972805.1 Zea mays clone 388369 WRKY36 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds. | |||
GenBank | KJ728312 | 1e-59 | KJ728312.1 Zea mays clone pUT6592 WRKY transcription factor (WRKY101) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825009.1 | 1e-117 | probable WRKY transcription factor 12 | ||||
Swissprot | Q93WY4 | 4e-30 | WRK12_ARATH; Probable WRKY transcription factor 12 | ||||
TrEMBL | A0A2S3I943 | 1e-130 | A0A2S3I943_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb01200.1.p | 1e-102 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44745.1 | 1e-31 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G01792.2 |
Publications ? help Back to Top | |||
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