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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.G01781.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
Trihelix |
Protein Properties |
Length: 207aa MW: 22555.8 Da PI: 11.5074 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.G01781.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 25.6 | 3.2e-08 | 21 | 82 | 1 | 66 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66
+Wt +e+la +a++ + +++r+ l ++W++v+++ ++++ qC++k e+l++r + ++
Pahal.G01781.1 21 CWTPDETLAVARAYTARRLTVGREHLTSADWAAVAAAAP----SKTARQCRHKVEKLRRRLRSSRR 82
8*********************************99865....689**************998765 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 207 aa
Download sequence Send
to blast |
MASPSPSPPA PASGRRVPPP CWTPDETLAV ARAYTARRLT VGREHLTSAD WAAVAAAAPS 60 KTARQCRHKV EKLRRRLRSS RRRPCPLLDA IDLLDGPSPP FFSKSQSRSP SLSPSPPPAI 120 SPPSPPSPPA SPPRKRRRDD AGDEDGLSDV VGALRAIGEG FLRAEERRME AARETQRMRM 180 EMALRHLDAQ RRLMDALVGR IVDALE*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 71 | 77 | KLRRRLR |
2 | 72 | 78 | LRRRLRS |
3 | 133 | 137 | RKRRR |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU968665 | 0.0 | EU968665.1 Zea mays clone 323209 hypothetical protein mRNA, complete cds. |
GenBank | KJ727947 | 0.0 | KJ727947.1 Zea mays clone pUT6045 trihelix transcription factor (THX32) mRNA, complete cds. |