PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01781.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 207aa    MW: 22555.8 Da    PI: 11.5074
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01781.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix25.63.2e-082182166
        trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66
                    +Wt +e+la  +a++ +  +++r+ l  ++W++v+++      ++++ qC++k e+l++r +  ++
  Pahal.G01781.1 21 CWTPDETLAVARAYTARRLTVGREHLTSADWAAVAAAAP----SKTARQCRHKVEKLRRRLRSSRR 82
                    8*********************************99865....689**************998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-62083No hitNo description
Gene3DG3DSA:1.10.10.604.8E-42273IPR009057Homeodomain-like
PROSITE profilePS500906.042274IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MASPSPSPPA PASGRRVPPP CWTPDETLAV ARAYTARRLT VGREHLTSAD WAAVAAAAPS  60
KTARQCRHKV EKLRRRLRSS RRRPCPLLDA IDLLDGPSPP FFSKSQSRSP SLSPSPPPAI  120
SPPSPPSPPA SPPRKRRRDD AGDEDGLSDV VGALRAIGEG FLRAEERRME AARETQRMRM  180
EMALRHLDAQ RRLMDALVGR IVDALE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17177KLRRRLR
27278LRRRLRS
3133137RKRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9686650.0EU968665.1 Zea mays clone 323209 hypothetical protein mRNA, complete cds.
GenBankKJ7279470.0KJ727947.1 Zea mays clone pUT6045 trihelix transcription factor (THX32) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826011.11e-140extensin-like
TrEMBLA0A2S3I9141e-139A0A2S3I914_9POAL; Uncharacterized protein
STRINGPavir.J28088.1.p1e-138(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139112024