PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01666.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 340aa    MW: 35988.6 Da    PI: 10.1679
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01666.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.64.1e-31259317259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+  dp+++++tYegeH+h+
  Pahal.G01666.1 259 ADEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERDPGDPSMLIVTYEGEHRHS 317
                     69************************9888****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.7E-20207256IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.0E-32247317IPR003657WRKY domain
PROSITE profilePS5081130.366253319IPR003657WRKY domain
SuperFamilySSF1182903.53E-26256317IPR003657WRKY domain
SMARTSM007743.9E-37258318IPR003657WRKY domain
PfamPF031063.3E-26260316IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MMTLDLMGRY GRLDEKVAIQ EAAAAGLRGM EHLISQLSRA GTGERSSSPP GAAPAQNQQH  60
PEQSHLQQRL QEVDCREITD MTVSKFKKVI SILNRTGHAR FRRGPVVAQS PGPAAACSEP  120
AALPAWSAPA PRPVTLDFTK SVSGYSRDSG FSVSGASSSF LSSVTTGDGS VSNGRGGGGS  180
SSLMLPPAVG AASCGKPPLS SSGAGQKRRC HEHAHSENVA GGKYGAAGGR CHCSKRRKHR  240
VKRTIRVPAI SPKVADIPAD EYSWRKYGQK PIKGSPYPRG YYKCSTVRGC PARKHVERDP  300
GDPSMLIVTY EGEHRHSPAE QDPPAAPPPL APLPELPNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20246316271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000250|UniProtKB:Q0JEE2}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00464DAPTransfer from AT4G31550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells (By similarity) (PubMed:15618416). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (By similarity). Repressed by GA (PubMed:15618416). {ECO:0000250|UniProtKB:Q0JEE2, ECO:0000269|PubMed:15618416}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826098.10.0WRKY transcription factor WRKY51-like
SwissprotQ6IEN11e-144WRK51_ORYSI; WRKY transcription factor WRKY51
TrEMBLA0A2S3I5K50.0A0A2S3I5K5_9POAL; Uncharacterized protein
STRINGSi012025m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.11e-91WRKY DNA-binding protein 11