PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

YABBY

Protein Properties

Length: 275aa MW: 28790 Da PI: 7.9208

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G01422.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	179.5	1.9e-55	24	227	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.............................. 70 eq+Cyv+C+ C+tilav vP +slfk+vtvrCGhC++llsvnl+ +aa + + + Pahal.G01422.1 24 EQEQLCYVHCKCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPTAAAANNQLPFGGGggqqqallsptsphglldemtmplqapslp 118 679*****************************************999665555554444433344678999999777777776666544 PP YABBY 71 .......lleelkveeenlksnvekeesastsvssekl.......................senedeevprvppvirPPekrqrvPsaynrfike 135 st +s+++ +e +++p+ + +krqrvPsaynrfik+ Pahal.G01422.1 119 saepasaC--------------------MSTLTSMNNScgggnnassvmsmaapppppvkpAPQEPQQLPKSV-ASGNKQKRQRVPSAYNRFIKD 192 32222221....................222222222233333333333446777776554445555666533.456679*********** PP YABBY 136 eiqrikasnPdishreafsaaaknWahfPkihfgl 170 eiqrikasnPdi+hreafsaaaknWahfP+ihfgl Pahal.G01422.1 193 EIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGL 227 *******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.7E-64	24	227	IPR006780	YABBY protein
SuperFamily	SSF47095	2.09E-7	168	220	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.4E-4	178	219	IPR009071	High mobility group box domain
CDD	cd00084	8.66E-5	181	217	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MMSSVPVPET FALDQHLAPQ QPAEQEQLCY VHCKCCDTIL AVGVPCSSLF KTVTVRCGHC 60 ANLLSVNLRG LLLPTAAAAN NQLPFGGGGG QQQALLSPTS PHGLLDEMTM PLQAPSLPSA 120 EPASACMSTL TSMNNSCGGG NNASSVMSMA APPPPPVKPA PQEPQQLPKS VASGNKQKRQ 180 RVPSAYNRFI KDEIQRIKAS NPDITHREAF SAAAKNWAHF PHIHFGLMPD QGMKKTSIQS 240 QEGGECMLFK DGLYVTAAAA AAAAAASTMG IAPF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	175	180	KQKRQR

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825940.1	1e-175	protein YABBY 5-like
Swissprot	Q01JG2	1e-114	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	1e-114	YAB5_ORYSJ; Protein YABBY 5
TrEMBL	A0A2S3I8S7	0.0	A0A2S3I8S7_9POAL; Uncharacterized protein
STRING	Pavir.Gb00743.1.p	1e-165	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	1e-38	YABBY family protein

Link Out ? help Back to Top
Phytozome	Pahal.G01422.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]