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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.G01401.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 381aa MW: 39509.2 Da PI: 6.7823 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.G01401.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 51.6 | 2.2e-16 | 90 | 137 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+W +eEd+llvd v+ G+g+W+ ++ g++R++k+c++rw +yl
Pahal.G01401.1 90 KGPWAPEEDKLLVDFVQANGPGNWRMLPKLAGLNRCGKSCRLRWTNYL 137
79********************************************97 PP
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2 | Myb_DNA-binding | 52.9 | 8.7e-17 | 143 | 188 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++TteE+ ++++++ G++ W+ Ia+ ++ gRt++++k++w+++l
Pahal.G01401.1 143 RGPFTTEEHNSILQLHAIVGNK-WSMIAAQLP-GRTDNEIKNYWNTHL 188
89********************.*********.************996 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 381 aa
Download sequence Send
to blast |
MPLPVVVAGL QQQPAARENP SHLWPPGSSS AYKSVGIYGH GSSSASLLVV PVVAADATEG 60 RERESDRRSV AAAAAAMGRT PCCDSKGIKK GPWAPEEDKL LVDFVQANGP GNWRMLPKLA 120 GLNRCGKSCR LRWTNYLRPD IKRGPFTTEE HNSILQLHAI VGNKWSMIAA QLPGRTDNEI 180 KNYWNTHLKK QLRQEALAGA DAAAQQLAAA GAASSCPAAR HMTQWETARL EAEARLSLLS 240 SSATTTVASA TAASSSSSTA AAEHEAAPDI FLRLWNSAVG ESFRCSAQGQ GAAAAHGPAA 300 ASPAAAGTPA ALRPAAPSGG GDDSSAASTN GTEAADDYQA FLDMAVEELA LLHGRLGVSF 360 SAFPTADVLA EASCLFAPFE *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK108621 | 1e-118 | AK108621.1 Oryza sativa Japonica Group cDNA clone:002-147-D04, full insert sequence. |