PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G01219.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 199aa MW: 22440.9 Da PI: 9.773 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.9 | 7.3e-13 | 4 | 56 | 43 | 98 |
S-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 43 grsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +sW+v r + ++ y+++ GWk+F+++n LkegD+ +F+++g++ +v ++r Pahal.G01219.1 4 TESWQVHG--RTSENSsYLISHGWKRFCQENSLKEGDISTFYVVGTT-L-WHVVIIR 56 689*****..5554445*************************88732.2.3555555 PP | |||||||
2 | B3 | 54.5 | 2.1e-17 | 110 | 188 | 7 | 87 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + ++++ + ++lp f+e+ g+ +++++tl+ +s sW+ ++ k+ + ++ ++GWk+F+++n++kegD+++F +g+ Pahal.G01219.1 110 NTSTME-NVFSLPLAFCEALGLREPCTITLKTSMSSTTSWQARVVPYKY-CNHLGGSGWKRFCQENRIKEGDVCTFNIVGT 188 444444.569*************99988888778999*******54555.57899**********************8773 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.647 | 1 | 58 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.6E-12 | 4 | 56 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-11 | 5 | 57 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.3E-10 | 5 | 54 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.33E-8 | 5 | 57 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 5.1E-19 | 99 | 197 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-18 | 99 | 197 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.35 | 103 | 198 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0015 | 105 | 198 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-14 | 113 | 193 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.09E-11 | 118 | 183 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MDSTESWQVH GRTSENSSYL ISHGWKRFCQ ENSLKEGDIS TFYVVGTTLW HVVIIRKPLL 60 RPVASARLTN IFQVVKNRRG QMVPLTPNKA SSKEKCAFEI GPPAWVKEIN TSTMENVFSL 120 PLAFCEALGL REPCTITLKT SMSSTTSWQA RVVPYKYCNH LGGSGWKRFC QENRIKEGDV 180 CTFNIVGTKL WHVVVARQ* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826051.1 | 3e-63 | putative B3 domain-containing protein Os04g0347400 | ||||
TrEMBL | A0A2T8IBN6 | 2e-81 | A0A2T8IBN6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb02050.1.p | 1e-101 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24680.2 | 3e-10 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G01219.1 |