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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G01216.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 401aa MW: 44760.7 Da PI: 9.2564 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.4 | 9.1e-12 | 142 | 224 | 11 | 98 |
HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ + +p kf+++h ++++++ + ++ ++g+++++kl + ++ +++t+GW++F +++ e ++ +++g++ f +vkvf Pahal.G01216.2 142 ME--KMLIPAKFVQQHiPKEHRNNHMAIVLGPHGKVYNIKL--EADRSDMFFTGGWSQFMVFHDITESNALLVRYEGSMVF--TVKVFG 224 33..389*********9666667789999************..8888899**************************99999..888885 PP | |||||||
2 | B3 | 58.4 | 1.3e-18 | 283 | 367 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ++k+ ++ ++l+++ l l k f++++g+ +++++tl++ +++g rsW v +k+s +y+l +GW++F+++n+LkegD+++F +++ Pahal.G01216.2 283 WIKKQINTNTLEKH-LALAKAFCDAIGLWEPCTITLRVSTTDGtRSWLVHGLPCKTS-SYLLVQGWRQFCQENHLKEGDTCTFNVIE 367 67888999999999.*************************9999*******545554.6************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.089 | 13 | 104 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.37E-8 | 23 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-8 | 23 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.064 | 54 | 104 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-15 | 129 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.9E-16 | 130 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.264 | 130 | 226 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.16E-12 | 131 | 223 | No hit | No description |
SMART | SM01019 | 1.2E-8 | 133 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.2E-9 | 141 | 223 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.67E-17 | 277 | 378 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-18 | 278 | 378 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.687 | 282 | 379 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0023 | 284 | 380 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.3E-14 | 285 | 367 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.27E-9 | 294 | 363 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MASSGDHVAA AKHLRVLLPF TCDSLRVPDE LAEDIGAGEA LVVGPLGSKG KVFWRVEVGR 60 DGDGAFLGRG WPELADACGV DAGWLLVLRH RGRGVLTVKA FDDTRCLSDL GAPAPPPVEA 120 AVSGKATARK PQFIIVLPTD FMEKMLIPAK FVQQHIPKEH RNNHMAIVLG PHGKVYNIKL 180 EADRSDMFFT GGWSQFMVFH DITESNALLV RYEGSMVFTV KVFGSDGFQR YSKQKENKAQ 240 QRSTLPHSEK LQKAPSVSIQ NRKRKNKTSL QRNSIYKIGP PSWIKKQINT NTLEKHLALA 300 KAFCDAIGLW EPCTITLRVS TTDGTRSWLV HGLPCKTSSY LLVQGWRQFC QENHLKEGDT 360 CTFNVIETTL WNVLITCHEE KMNQFCYVSY MLKHLPLFVL * |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825227.1 | 0.0 | putative B3 domain-containing protein Os04g0347400 | ||||
TrEMBL | A0A2T8IBN3 | 0.0 | A0A2T8IBN3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga02461.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31680.1 | 7e-14 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G01216.2 |