PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01211.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 427aa    MW: 47247.2 Da    PI: 7.7639
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01211.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3437.9e-14296379186
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                     f+k+ ++++  +++ l l k+f++++g+  ++ + +tl+++ +  +sW+v   +++k+ +y l +GW+ F+++n ++ gD+++F++++
  Pahal.G01211.1 296 FVKKQINAN--TLKELALAKPFCDAIGLHGPC-IIITLKTSMSntESWKVHA-VQRKDMGYRLLQGWRLFCSDNSIELGDICTFTVIE 379
                     566665544..55569**********887555.7888888554559****99.688888899999*******************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-72499IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-82499IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.13452104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.2E-13119219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-13121219IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.6123219IPR003340B3 DNA binding domain
CDDcd100176.21E-7124216No hitNo description
SMARTSM010190.11126219IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-14290389IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.5E-14292387IPR015300DNA-binding pseudobarrel domain
CDDcd100172.42E-10294381No hitNo description
SMARTSM010190.0098296391IPR003340B3 DNA binding domain
PfamPF023622.2E-10297379IPR003340B3 DNA binding domain
PROSITE profilePS508639.671328391IPR003340B3 DNA binding domain
SuperFamilySSF1019361.1E-5390423IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.443392426IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-5392424IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MASSAGRGGA EIKHPRVLLP FTCDSLRIPD ELAEGIGAGE ALVVGPASGT AKHWRVEVGW  60
DGDGAFLGRG WPEFADACGV EAGWLLVLRH RGQGLLTVKA GELPAPSPPA VGATASSKDA  120
SRKPQFIRVH SRDFMEKLLI PAEFVQQYLS DENLNNRTAI IFGPLGKVSH IELEKNSSDV  180
FFAGAWSQFL VFHYITEADA LLLRYEGNMV FTVKVFGLDG YQRDSKHKET RAKQVSTSAE  240
IEEQERQEAP SFSIQKHCKN KVPGSAGEKK PKGIVTPINE ESSWMKPVYE IGPPLFVKKQ  300
INANTLKELA LAKPFCDAIG LHGPCIIITL KTSMSNTESW KVHAVQRKDM GYRLLQGWRL  360
FCSDNSIELG DICTFTVIET TVWDVIATRW PGWRQFCREN RIKVGEICTI NIFKTTLWHV  420
IISSPE*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825039.10.0putative B3 domain-containing protein Os04g0347400 isoform X1
TrEMBLA0A2T8IBP90.0A0A2T8IBP9_9POAL; Uncharacterized protein
STRINGPavir.Ga02463.1.p1e-177(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.11e-09B3 family protein