PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01209.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 421aa    MW: 46490.5 Da    PI: 10.0934
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01209.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.31.1e-12481123199
                     .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +++ t  + ++ g++W+v++   + +++ +l++GW eF  a+g+ +g fvv+++ g  ++ l++k+f++
  Pahal.G01209.1  48 AQGPTALVVSPFGKVWRVEV--GRDGDGAFLGRGWPEFLAAHGVGVGWFVVLRHAG--RGALTFKAFDT 112
                     355588999***********..999999*************************876..55569999986 PP
2B343.94.2e-141502301497
                     T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       +++p +f++++  ++  +s+t ++ ++ g+ W+++l  +++++++++++GW++F + +g+  gD+++++++g++ f  +vk+f
  Pahal.G01209.1 150 EKMIIPARFVKHYvTEEYLNSRTAVIFSPLGKFWQIEL--ENNPSGMFFAGGWSQFLEFHGISKGDVLLLRYEGNMVF--KVKAF 230
                     459*******9998444458899***************..**********************************9999..77766 PP
3B347.63.1e-153133891192
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     l +++l l+ kf++ +g ++++++tl+ e  s rsW+v    + k  +++l+ GWk+F+++n++k+gD ++F  ++   ++l
  Pahal.G01209.1 313 L-ECLLPLSIKFCRGIGFQNTCTITLKTEIDSTRSWKVHGA-TYKTYGCILGYGWKSFCQENRIKTGDLCTFNIME---TTL 389
                     4.478999********99999988888888999*******3.33334599**********************9654...333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.5E-416113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.0E-1148114IPR015300DNA-binding pseudobarrel domain
PfamPF023624.6E-1049112IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-1250115IPR015300DNA-binding pseudobarrel domain
CDDcd100172.92E-755111No hitNo description
PROSITE profilePS508639.36160113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-18136233IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.562137233IPR003340B3 DNA binding domain
SuperFamilySSF1019361.14E-18137238IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.1E-12140233IPR003340B3 DNA binding domain
PfamPF023621.6E-11150229IPR003340B3 DNA binding domain
CDDcd100174.62E-14151230No hitNo description
SMARTSM010190.02304398IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-14308396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-14308396IPR015300DNA-binding pseudobarrel domain
CDDcd100173.89E-7314396No hitNo description
PfamPF023621.3E-11315395IPR003340B3 DNA binding domain
PROSITE profilePS5086310.771334398IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MASSPSAVGA RAAAKQLKAL MPPSFHKLRI SDELAGCFDA GGGGGGGAQG PTALVVSPFG  60
KVWRVEVGRD GDGAFLGRGW PEFLAAHGVG VGWFVVLRHA GRGALTFKAF DTSFCIKEFA  120
APAAVMASRS SKGVSCKPQF IRIVYPNLTE KMIIPARFVK HYVTEEYLNS RTAVIFSPLG  180
KFWQIELENN PSGMFFAGGW SQFLEFHGIS KGDVLLLRYE GNMVFKVKAF GLNGHQKDFK  240
NQDAGILLNV EMQQESLSPI RKRKNNDEKS SSKENKRPKS SVTYLNTKLP LKKPDYQIGP  300
SSWIRKEINT YALECLLPLS IKFCRGIGFQ NTCTITLKTE IDSTRSWKVH GATYKTYGCI  360
LGYGWKSFCQ ENRIKTGDLC TFNIMETTLW HVTIKRSPAS ADTKKQKESP CSSNKEHETK  420
*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825231.10.0putative B3 domain-containing protein Os04g0347400
SwissprotQ7XS751e-119Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900
TrEMBLA0A2T7CTI00.0A0A2T7CTI0_9POAL; Uncharacterized protein
STRINGPavir.Gb02310.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.11e-14B3 family protein