PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G01168.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

ARR-B

Protein Properties

Length: 269aa MW: 29939.8 Da PI: 6.5219

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G01168.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	22.9	1.9e-07	91	120	26	55
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 AtP+++ +m+v+++ ++++ HLQk+R Pahal.G01168.1 91 TATPRKVQLIMNVNSIGRKQISAHLQKHRK 120 59**************************96 PP
2	Response_reg	23.9	2e-09	15	96	1	80
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEE.ST CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvt.ah 80 v++vd++ +++ r++l k ++ +v + +++ eal+ lk++ +D l+ ++m +m+G+++l r+++++l++i t ++ Pahal.G01168.1 15 VIVVDENLCHANAARRLLVKLDF-QVLVYTSPVEALKFLKDHIkdIDFALVAVNMKEMHGFQFLDISRKSHKNLQVITATpRK 96 7899*****************.***********887666***************98899999***999444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	7.6E-12	10	91	No hit	No description
SuperFamily	SSF52172	2.28E-12	12	94	IPR011006	CheY-like superfamily
PROSITE profile	PS50110	11.43	14	124	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	3.4E-7	15	96	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	1.09E-8	16	90	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.8E-6	92	124	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MGNQRIGRPS DKLGVIVVDE NLCHANAARR LLVKLDFQVL VYTSPVEALK FLKDHIKDID 60 FALVAVNMKE MHGFQFLDIS RKSHKNLQVI TATPRKVQLI MNVNSIGRKQ ISAHLQKHRK 120 KVEKELRNTD AKKCSNDPEI QPANISDEEM SWDETGNTQE TQGKTMYEAM RRALKLGTVF 180 DESQLPNDPF GRQASKGEVD MTGDGYGRDD WTYAFGGNSV VSETQNAENA KGVMGTKCDS 240 DKQVPNGDAQ AQVMKLVTYS DSEDGEAF*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825246.1	1e-128	two-component response regulator ORR29-like
TrEMBL	A0A2T8IBS7	1e-126	A0A2T8IBS7_9POAL; Uncharacterized protein
STRING	Pavir.Ga02356.1.p	1e-112	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5920	23	45

Link Out ? help Back to Top
Phytozome	Pahal.G01168.1