PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01013.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 421aa    MW: 46557 Da    PI: 8.5264
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01013.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.31.4e-101062243126
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     p f F+P  ++lv +yL ++ + +  +l   i+++d+y ++P  L k    ++  + ew fF++r +        +r +  g  + tg+ k+   
  Pahal.G01013.1 106 PPFDFDPATDDLVGRYLPARRALRCGDLPPQIHDADVYGAHPAFLAKvhpPANCARPEWLFFVCRGRGLG----GKRRAGPGAYRLTGEAKPSGG 196
                     5699*************99988877777667**************843443333566********99654....4455678********888655 PP

             NAM  95 kkgelvglkktLvfy..kgrapkgektdWvmhey 126
                           +  +++ +y  +++a+++++t+W m+ey
  Pahal.G01013.1 197 ------WYCHSFRYYedSAEASDARETEWRMEEY 224
                     ......8889*****4445788899********9 PP
2NAM24.57.5e-0827239214127
             NAM  14 lvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeek.ewyfFskrdkkyatgk.....rknratksgyWkatgkdkevlskkgelvg 101
                     l + yL+   +g++l++ ++ + +d++ ++P  L +    a+++ ew+f ++r +++ +g+     r++ra   g      +  +v++ +g++ g
  Pahal.G01013.1 272 LTQLYLASLSAGDPLRC-RMHRAADMCAAHPAVLTAvLPPANDQfEWFFVVRRPRTEDHGDddgtaRPRRA-GPGQYVPAARYWDVKDGEGRELG 364
                     55679999999999999.667778**********842333344469*999999999986554555466665.77999999********9****** PP

             NAM 102 lkktLvfy..kgrapkgektdWvmheyr 127
                       + + +   +++ +++++t W m+ey 
  Pahal.G01013.1 365 YWRLFRYRedDEQVRRTSRTVWSMEEYG 392
                     *******94334667889*********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.598104245IPR003441NAC domain
SuperFamilySSF1019411.96E-18106243IPR003441NAC domain
PfamPF023655.4E-7106224IPR003441NAC domain
PROSITE profilePS5100514.825259416IPR003441NAC domain
SuperFamilySSF1019415.89E-18271415IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
RLGNQTRALY ETARRPRVPE AITSRFGTLE NVQDTVEPQR HRRAGAPGAM QQAASSSAPS  60
AGFREEVTDD GWVLLGAGGS SDTAAGGRPL RPPRRGGNRP PAVGQPPFDF DPATDDLVGR  120
YLPARRALRC GDLPPQIHDA DVYGAHPAFL AKVHPPANCA RPEWLFFVCR GRGLGGKRRA  180
GPGAYRLTGE AKPSGGWYCH SFRYYEDSAE ASDARETEWR MEEYGDRCPG GAGALDVVVC  240
KVYPARGGAL DRRLRLDGAA RRAGADVRPQ VLTQLYLASL SAGDPLRCRM HRAADMCAAH  300
PAVLTAVLPP ANDQFEWFFV VRRPRTEDHG DDDGTARPRR AGPGQYVPAA RYWDVKDGEG  360
RELGYWRLFR YREDDEQVRR TSRTVWSMEE YGFGPDFPYG EHGGDEELVV YKVYLRMARQ  420
*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825360.10.0uncharacterized protein LOC112900773
TrEMBLA0A2T7CX730.0A0A2T7CX73_9POAL; Uncharacterized protein
TrEMBLA0A2T8ID370.0A0A2T8ID37_9POAL; Uncharacterized protein
STRINGPavir.Gb01277.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147671819