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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G00929.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 308aa MW: 32749.2 Da PI: 6.7986 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 65.4 | 1.7e-20 | 23 | 150 | 8 | 126 |
NAM 8 hPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknra..tksgyWkatgkdkev 92 hP++eel++ +L+++++++ + ++++d+y++ P +L + + ++++ wyfFs + k++ g+r+ r+ t g W++ k+v Pahal.G00929.1 23 HPSEEELITSFLRPRLAADGsggAPR-ALVHDADVYSAGPDELTRvfdpaVAGNGDRAWYFFSAVRAKTSDGQRRARTvgTGGGCWHSEAGAKPV 116 9**************99888554333.56**************85467755666899********************63477999********** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmhey 126 ++ g+ g ++++ f ++ + +++ W+m e Pahal.G00929.1 117 VDGAGRCLGHRRSFSFVTKAGGQRVRSGWLMVEL 150 **9**************99999999******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.392 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-12 | 21 | 150 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.14E-29 | 23 | 166 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MVVATRRTTA AHPTPPRPDL AAHPSEEELI TSFLRPRLAA DGSGGAPRAL VHDADVYSAG 60 PDELTRVFDP AVAGNGDRAW YFFSAVRAKT SDGQRRARTV GTGGGCWHSE AGAKPVVDGA 120 GRCLGHRRSF SFVTKAGGQR VRSGWLMVEL GLDDADGVAL CKIYFSPRAR TSGGAASAAS 180 SAGRKRKQAA AGDPAASSRR GRRSTEAGAP RRDDAVTADA ESTQDGGGLA DESSASSDDE 240 DEDGLWKEGM FLSWWMRNRD RLVEEHGIVD RSDEELQKTL GLDKVMKLLN RDYGDSLLIK 300 PSAPENP* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008657827.1 | 7e-93 | uncharacterized protein LOC103637404 | ||||
TrEMBL | A0A2S3HSV8 | 0.0 | A0A2S3HSV8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea02202.1.p | 1e-141 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4011 | 29 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63790.1 | 4e-14 | NAC domain containing protein 102 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G00929.1 |