PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G00928.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 364aa    MW: 38315.2 Da    PI: 6.0772
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G00928.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.34.2e-25161465128
             NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkev 92 
                     f+ hPtd elv+ yL++ +e+ k  +  +i+e d+y ++P dL +      ++ +e+ wyf ++ ++k+ +gkrk r  at +g W++  k+k+v
  Pahal.G00928.1  16 FQSHPTDLELVNSYLRPFLETGKAAA--FIHEGDVYAADPADLTRqfapaVAQDGERAWYFLTPLRHKSVRGKRKARtvATGEGCWHNEAKSKPV 108
                     7779*****************99666..8**************84467755566888********************76688************* PP

             NAM  93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++  +++++g ++++ f k+++ + ++t W+m e rl
  Pahal.G00928.1 109 CTAihGKRQIGYRQSFSFIKKEDGSRVRTGWLMMELRL 146
                     *99989999************99999********9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.66812173IPR003441NAC domain
SuperFamilySSF1019417.32E-3114173IPR003441NAC domain
PfamPF023652.1E-1415146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MVRTPSAASK PPCAAFQSHP TDLELVNSYL RPFLETGKAA AFIHEGDVYA ADPADLTRQF  60
APAVAQDGER AWYFLTPLRH KSVRGKRKAR TVATGEGCWH NEAKSKPVCT AIHGKRQIGY  120
RQSFSFIKKE DGSRVRTGWL MMELRLLKDD AGQGARAEEA ALGNLVLCKV YRSPRNPEPG  180
GGGPAPALKE EEAADGDDES SAATADDDDD DSSDTPGPTK KSDEQESSEA TVAAPSRHSK  240
ADDEISGAAA AGAGREEKAA GDEDSAETSA SSPARKRKAP DDEGSGAAAA APKRASPGAR  300
APASTEMQCP HCGTHLVVTL KISETKSETE IAKGEPGPGA SDTAPRGDAR GAPERKVRFH  360
QFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-131617119166Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817187.10.0protein ATAF2-like
TrEMBLA0A2S3HSV70.0A0A2S3HSV7_9POAL; Uncharacterized protein
STRINGPavir.J25882.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-17NAC domain containing protein 47