PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G00927.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 374aa MW: 40089.5 Da PI: 5.9197

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G00927.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	36.9	1.1e-11	37	144	30	127
NAM 30 leevikevdiykvePwdLp.k....kvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlsk.kgel....vglkktLvfy... 109 + e+i+e+d y + P +L + ++ +e+ wyfF++ + k+ nr t +g+Wk++g ++v s+ + + +g ++ ++f Pahal.G00927.1 37 VGEFIHEADAYAAGPDQLTgQflpaTAGDGEEAWYFFTTLKLKAL----INRavDTGEGRWKQQGPPHPVRSNlG-DHppprIGQRQNFAFVwke 126 4468************843676555568889**998864....444225889**********852.334677*****9764 PP NAM 110 kgrapkgektdWvmheyr 127 + + ++e+t+W m e r Pahal.G00927.1 127 DDKLVRSERTRWSMVELR 144 45667889****9976 PP
2	NAM	22.8	2.5e-07	264	307	5	49
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49 f hP+d elv+ yL++ v + + e+i+e+diy + P +L + Pahal.G00927.1 264 FASHPSDAELVNSYLRPWVVSGEKVG-EFIHEADIYAAGPDRLTT 307 6679************99999555.89************74 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	16.248	10	159	IPR003441	NAC domain
SuperFamily	SSF101941	1.12E-13	29	157	IPR003441	NAC domain
Pfam	PF02365	1.1E-5	52	144	IPR003441	NAC domain
SuperFamily	SSF101941	1.29E-8	254	309	IPR003441	NAC domain
PROSITE profile	PS51005	8.074	260	373	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MQAPRPGRRL RPSPRTPPTR SSSTPSCAPR VVSGEKVGEF IHEADAYAAG PDQLTGQFLP 60 ATAGDGEEAW YFFTTLKLKA LINRAVDTGE GRWKQQGPPH PVRSNLGDHP PPRIGQRQNF 120 AFVWKEDDKL VRSERTRWSM VELRRDPLDL LALCKVYRCV SDPKAKADES CGGNGGGAWG 180 HGSGRRGLRC GWRREEEDDE EIDAETTAGS PGRQKKAVGA SAGAAMTGEL CDGWRAPLDA 240 AEKAKAPAEA EDVSAMAGSQ PAPFASHPSD AELVNSYLRP WVVSGEKVGE FIHEADIYAA 300 GPDRLTTDLT LNSGARRHRL DARSSSARAA GAATTLELCL GCGASLDAAE EAETPADAAE 360 PEDPSKPRLH NFF*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MQAPRPGRRL RPSPRTPPTR SSSTPSCAPR VVSGEKVGEF IHEADAYAAG PDQLTGQFLP  60
ATAGDGEEAW YFFTTLKLKA LINRAVDTGE GRWKQQGPPH PVRSNLGDHP PPRIGQRQNF  120
AFVWKEDDKL VRSERTRWSM VELRRDPLDL LALCKVYRCV SDPKAKADES CGGNGGGAWG  180
HGSGRRGLRC GWRREEEDDE EIDAETTAGS PGRQKKAVGA SAGAAMTGEL CDGWRAPLDA  240
AEKAKAPAEA EDVSAMAGSQ PAPFASHPSD AELVNSYLRP WVVSGEKVGE FIHEADIYAA  300
GPDRLTTDLT LNSGARRHRL DARSSSARAA GAATTLELCL GCGASLDAAE EAETPADAAE  360
PEDPSKPRLH NFF*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3L6QXF6	1e-153	A0A3L6QXF6_PANMI; NAC domain-containing protein 45-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22321	5	7

Link Out ? help Back to Top
Phytozome	Pahal.G00927.1