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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G00619.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 409aa MW: 45191.9 Da PI: 4.7583 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.3 | 9.4e-30 | 62 | 207 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........t 78 lp+G++F+P+d el+ ++L+ k + ++ ++++ i+e+ +i++++P++Lp +k + ++++fF+k +++y g+rk+r+ Pahal.G00619.1 62 LPAGVKFDPSDLELL-QHLQGKSSLQNsnsralIDEFIPtIAEMeGICYTHPKNLP-GIKMDGSSLHFFHKVSNAYGCGHRKRRKitgnndsvcD 154 799************.889998877775566554443444888878**********.6677889********************75666666654 PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128 ++ +W++tg +k++++++g ++g kk+Lv+y+g+++ g+ + +Wvmh+y+l Pahal.G00619.1 155 EHIRWHKTGASKPIYDENGFKIGWKKILVLYRGSKRGGSkidRDNWVMHQYHL 207 4778***************************99998887444689******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-34 | 47 | 226 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.941 | 62 | 226 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-11 | 63 | 207 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MDVLPFCSSW IMTGVGLVKR IRNATQLISL RLGELVAEPY IKCPNCECGI DTSNVSLVWP 60 ELPAGVKFDP SDLELLQHLQ GKSSLQNSNS RALIDEFIPT IAEMEGICYT HPKNLPGIKM 120 DGSSLHFFHK VSNAYGCGHR KRRKITGNND SVCDEHIRWH KTGASKPIYD ENGFKIGWKK 180 ILVLYRGSKR GGSKIDRDNW VMHQYHLGAD EDEANGELVV SKVFYQLLSK KNDKSEMDDV 240 ELESEPSAAK IDPRTPNSEP SAAKIDPRTP KTDPPQPCLP SNSPCDTEQY TPIQVDQEEE 300 ECGTSIRRVK VEAAECSAWF AELPPAVVVA DLPASDEPRQ LMDAPRVGPE PEAPIPVDGS 360 NTDLFNGLPD LDTTFQCLGT PSDSISLTDI HFGSQDSFGG WPDSFKFY* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824944.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X1 | ||||
TrEMBL | A0A2S3I7M8 | 0.0 | A0A2S3I7M8_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7CWA8 | 0.0 | A0A2T7CWA8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga01597.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 2e-67 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G00619.1 |