PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G00619.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 409aa    MW: 45191.9 Da    PI: 4.7583
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G00619.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.39.4e-30622071128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........t 78 
                     lp+G++F+P+d el+ ++L+ k + ++      ++++   i+e+ +i++++P++Lp  +k + ++++fF+k +++y  g+rk+r+          
  Pahal.G00619.1  62 LPAGVKFDPSDLELL-QHLQGKSSLQNsnsralIDEFIPtIAEMeGICYTHPKNLP-GIKMDGSSLHFFHKVSNAYGCGHRKRRKitgnndsvcD 154
                     799************.889998877775566554443444888878**********.6677889********************75666666654 PP

             NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128
                     ++ +W++tg +k++++++g ++g kk+Lv+y+g+++ g+   + +Wvmh+y+l
  Pahal.G00619.1 155 EHIRWHKTGASKPIYDENGFKIGWKKILVLYRGSKRGGSkidRDNWVMHQYHL 207
                     4778***************************99998887444689******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-3447226IPR003441NAC domain
PROSITE profilePS5100528.94162226IPR003441NAC domain
PfamPF023651.2E-1163207IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDVLPFCSSW IMTGVGLVKR IRNATQLISL RLGELVAEPY IKCPNCECGI DTSNVSLVWP  60
ELPAGVKFDP SDLELLQHLQ GKSSLQNSNS RALIDEFIPT IAEMEGICYT HPKNLPGIKM  120
DGSSLHFFHK VSNAYGCGHR KRRKITGNND SVCDEHIRWH KTGASKPIYD ENGFKIGWKK  180
ILVLYRGSKR GGSKIDRDNW VMHQYHLGAD EDEANGELVV SKVFYQLLSK KNDKSEMDDV  240
ELESEPSAAK IDPRTPNSEP SAAKIDPRTP KTDPPQPCLP SNSPCDTEQY TPIQVDQEEE  300
ECGTSIRRVK VEAAECSAWF AELPPAVVVA DLPASDEPRQ LMDAPRVGPE PEAPIPVDGS  360
NTDLFNGLPD LDTTFQCLGT PSDSISLTDI HFGSQDSFGG WPDSFKFY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824944.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X1
TrEMBLA0A2S3I7M80.0A0A2S3I7M8_9POAL; Uncharacterized protein
TrEMBLA0A2T7CWA80.0A0A2T7CWA8_9POAL; Uncharacterized protein
STRINGPavir.Ga01597.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.12e-67NAC family protein