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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G00600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 233aa MW: 25455.5 Da PI: 5.3583 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 48.6 | 2.6e-15 | 25 | 166 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lelee.vikevdiykvePwdLp.kkvkaeek..ew.yfFskrdkkya.......tgkrknratks 80 +p+G+ F+ + l+++yL + + + + ++ + v + vd+y + P+ Lp +++ +++ w yfF++r ++ +g+ + +++ Pahal.G00600.1 25 MPRGYVFQSKARCLLDYYLVPMALHGRvaeRNIRDsVAQGVDVYALRPEALPfLRCNRDRTgqVWgYFFATRPAAAGgssagssHGDDVREVAAG 119 6899***************9998888855422322268999***********64444433333779****9999887555554344455557899 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g W+ g + e + ++ge+ ++ ++f+ + g+kt W m+e+rl Pahal.G00600.1 120 GCWRRYGGEVEYVGEDGEAYAFRRRFAFH-EAGDGGNKTVWRMKEFRL 166 *********999999**************.5677889*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.81E-17 | 21 | 191 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 20.641 | 25 | 193 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-8 | 26 | 166 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MAQPPEATTA PVPALDRTPW SISEMPRGYV FQSKARCLLD YYLVPMALHG RVAERNIRDS 60 VAQGVDVYAL RPEALPFLRC NRDRTGQVWG YFFATRPAAA GGSSAGSSHG DDVREVAAGG 120 CWRRYGGEVE YVGEDGEAYA FRRRFAFHEA GDGGNKTVWR MKEFRLNMAA SAFHGVAFHP 180 RAKGLAIWKV YNEPIPDPED EPAVDYYNSD DENGAIVITV GDAIVDPPAP AA* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826306.1 | 1e-171 | uncharacterized protein LOC112901581 | ||||
TrEMBL | A0A2S3I7R4 | 1e-169 | A0A2S3I7R4_9POAL; Uncharacterized protein | ||||
STRING | Sb06g019930.1 | 2e-78 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12891 | 22 | 31 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G00600.1 |