PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G00576.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 705aa    MW: 75100 Da    PI: 7.6514
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G00576.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.6e-31285342260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +Dgy+WrKYGqK+vk se+prsY++Ct+++C+vkkkvers+ +++++ei+Y+g+Hnh+k
  Pahal.G00576.1 285 EDGYSWRKYGQKQVKHSEYPRSYFKCTHPNCQVKKKVERSH-EGHITEIIYKGTHNHPK 342
                     8****************************************.***************85 PP
2WRKY104.74.8e-33493551159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  Pahal.G00576.1 493 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 551
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-27278343IPR003657WRKY domain
SuperFamilySSF1182904.05E-25278343IPR003657WRKY domain
PROSITE profilePS5081121.918279343IPR003657WRKY domain
SMARTSM007744.0E-34284342IPR003657WRKY domain
PfamPF031061.1E-23285341IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.8E-37478553IPR003657WRKY domain
SuperFamilySSF1182907.32E-29485553IPR003657WRKY domain
PROSITE profilePS5081137.539488553IPR003657WRKY domain
SMARTSM007744.0E-38493552IPR003657WRKY domain
PfamPF031062.9E-25494551IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MEGHVGMEEG KDPNPGPLSL MRGFQTETFL PDTEVAKAGF EKDGLSVAIR SPQEEGRSLP  60
MTPQFGQKSS PGITLAERMQ ARAGFRVTKL SVPFSTAVAA DSVPGAPSPY LTIPPGLSPA  120
TLLDSPVFIS NAMGQASPTT GKLFMLGSTN DNDPIRYGGP LLGDGPDSFS FKPLDLKSSH  180
YTAEGKKESL CNNKPPLPST HVSVKTETKI LPVQEANLLG QLNQQNHSGR TNMKSGSQDP  240
NSKLSRLATV TGAGNEHISS PHSQPAEEGD TRGDYPAMAT TTPAEDGYSW RKYGQKQVKH  300
SEYPRSYFKC THPNCQVKKK VERSHEGHIT EIIYKGTHNH PKPAQSRRPG VPPVHPFGEG  360
AQADTPDNPG SHTNTAEARQ AWHNNAGVKD LHSDGMNATS PPSVPGELCD SSASMQIHDA  420
GGVDVTSAVS DEVDGEDRVT HGSMSQGDAD AEGDELESKR RKLESYAIDM STASRAVREP  480
RVVIQTTSEV DILDDGYRWR KYGQKVVKGN PNPRSYYKCT HPGCSVRKHV ERASHDLKSV  540
ITTYEGKHNH EVPAARNSGH PSTATATAAA AARRPEHPSV HDGLMRHLGG CGAPFGLPPP  600
PRDPLAPMVN YPTYASAAGL GGSGPTSLPS LPMPGGPLGP VEGLKLPMLA PSSLHQHPLL  660
RHRQAMQAAG LVPPKADVKV EGSGAPPPSV YQLMRSGLPL GHQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36285554878Probable WRKY transcription factor 4
2lex_A2e-36285554878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823122.10.0probable WRKY transcription factor 2
SwissprotQ9FG771e-120WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A2T8ICP10.0A0A2T8ICP1_9POAL; Uncharacterized protein
STRINGSi012785m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-122WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]