![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.G00181.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 258aa MW: 25943.7 Da PI: 7.6726 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 7.8e-20 | 85 | 134 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae+Aa+a++aa+ +++g Pahal.G00181.1 85 KYRGVRRRP-WGKWAAEIRDPQ----KaARVWLGTFATAEDAARAYDAAAVRFRG 134 8********.**********93....36***********************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-32 | 84 | 143 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-23 | 85 | 143 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.1E-36 | 85 | 148 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.49E-19 | 85 | 141 | No hit | No description |
Pfam | PF00847 | 5.7E-13 | 85 | 134 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.607 | 85 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 86 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 108 | 124 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
MWIGAVVAPT TTPMVPSEHA LAAENAAIVS ALTHVVASGR GPPLPPPAIV VPWQHAGDGC 60 SGAAGQGQEQ LAGAAGRGAA PPARKYRGVR RRPWGKWAAE IRDPQKAARV WLGTFATAED 120 AARAYDAAAV RFRGSRARLN FPEDAAARRA RDAEAASAAA SAGPPAALLE SQAAGAGAGS 180 GDDMADYLEY SRILEGGEPS GIMDGLFGGD GNGRFLGSWS IGTSPPSSGS GAAASSPLFR 240 HSDGGKQSSN NSAAYGD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-23 | 84 | 142 | 4 | 63 | ATERF1 |
3gcc_A | 9e-23 | 84 | 142 | 4 | 63 | ATERF1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK107125 | 1e-63 | AK107125.1 Oryza sativa Japonica Group cDNA clone:002-124-B10, full insert sequence. | |||
GenBank | AL713902 | 1e-63 | AL713902.2 Oryza sativa chromosome 12, . BAC OJ1494_F10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AL844874 | 1e-63 | AL844874.1 Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 1e-63 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012620 | 1e-63 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. | |||
GenBank | CU406355 | 1e-63 | CU406355.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109D06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822865.1 | 1e-180 | ethylene-responsive transcription factor ERF110-like | ||||
TrEMBL | A0A2S3I6J7 | 1e-179 | A0A2S3I6J7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J15316.1.p | 1e-109 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14299 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G43160.1 | 2e-20 | related to AP2 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.G00181.1 |