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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.G00181.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
ERF |
Protein Properties |
Length: 258aa MW: 25943.7 Da PI: 7.6726 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.G00181.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 62.7 | 7.8e-20 | 85 | 134 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+W+AeIrdp + +r++lg+f tae+Aa+a++aa+ +++g
Pahal.G00181.1 85 KYRGVRRRP-WGKWAAEIRDPQ----KaARVWLGTFATAEDAARAYDAAAVRFRG 134
8********.**********93....36***********************9998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 258 aa
Download sequence Send
to blast |
MWIGAVVAPT TTPMVPSEHA LAAENAAIVS ALTHVVASGR GPPLPPPAIV VPWQHAGDGC 60 SGAAGQGQEQ LAGAAGRGAA PPARKYRGVR RRPWGKWAAE IRDPQKAARV WLGTFATAED 120 AARAYDAAAV RFRGSRARLN FPEDAAARRA RDAEAASAAA SAGPPAALLE SQAAGAGAGS 180 GDDMADYLEY SRILEGGEPS GIMDGLFGGD GNGRFLGSWS IGTSPPSSGS GAAASSPLFR 240 HSDGGKQSSN NSAAYGD*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK107125 | 1e-63 | AK107125.1 Oryza sativa Japonica Group cDNA clone:002-124-B10, full insert sequence. |
GenBank | AL713902 | 1e-63 | AL713902.2 Oryza sativa chromosome 12, . BAC OJ1494_F10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
GenBank | AL844874 | 1e-63 | AL844874.1 Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
GenBank | AP014968 | 1e-63 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
GenBank | CP012620 | 1e-63 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
GenBank | CU406355 | 1e-63 | CU406355.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109D06, full insert sequence. |