PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G00115.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family E2F/DP
Protein Properties Length: 445aa    MW: 48604 Da    PI: 6.3291
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G00115.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP81.66.7e-26125190171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     r+++sL llt+kf++ll+++++gi++ln+ a++L   dv  ++RRiYDi+NVLe+++liekk kn+i wkg
  Pahal.G00115.1 125 RYDSSLALLTRKFVNLLKQAQDGILDLNSTADKL---DV--QKRRIYDITNVLEGIGLIEKKLKNRICWKG 190
                     6899******************************...**..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-27123192IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.5E-33125190IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.77E-16125188IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.1E-22127190IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146609.41E-34200306No hitNo description
SuperFamilySSF1440743.66E-29202307No hitNo description
PfamPF164212.7E-29205305IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MPQAMSGAAW PAVAQQIVQS LQRCERLPPA GPPFADALGD YHRFPPPSSS AAAAAPLAGG  60
HGDFEEGIVV GTPLKRKAPY GEAPVSGKSA RTYKSKAKCS KPVPQTPISN AASPGNPPTP  120
AGPCRYDSSL ALLTRKFVNL LKQAQDGILD LNSTADKLDV QKRRIYDITN VLEGIGLIEK  180
KLKNRICWKG LDESGTNLDN DLSVLKSEIE NLNLQEQALD EHISKMHKKL KELTEDESRQ  240
RWLFLTEDDI KGLPCFQNQT LIAIKAPHGS SVEVPNPDVM TGESFRRRYR IIIRSTMGPI  300
ALYLVSNFEM KSEEKLDETA TLASHTHLAK RASSVKGPRT KRAGQSCSKE VVVNAQQIHK  360
TPDLNAPYPS EGVLRKITPS DVDSDADYWL LTDDDVSITD MWRTAPAEMQ WDQIDPNDFL  420
AEEVSTPGPG TLSQQPAAIG ETYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-24120191274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824201.10.0transcription factor E2FA-like isoform X1
TrEMBLA0A2S3I6J90.0A0A2S3I6J9_9POAL; Uncharacterized protein
STRINGPavir.J29330.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-103E2F transcription factor 3