PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F02729.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 286aa    MW: 30304.9 Da    PI: 4.7132
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F02729.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.6e-18100149255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr ++ +g+++AeIrdp +   rkr +lg+f+taeeAa+ ++ a+++l+g
  Pahal.F02729.1 100 PYRGVRLRP-WGKFAAEIRDPAQ---RKRLWLGTFDTAEEAAAVYDDAALRLKG 149
                     59*******.**********943...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.7E-34100163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-29100158IPR001471AP2/ERF domain
PROSITE profilePS5103222.787100157IPR001471AP2/ERF domain
PfamPF008477.3E-11101149IPR001471AP2/ERF domain
CDDcd000181.17E-27101157No hitNo description
PRINTSPR003678.5E-10101112IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-21101157IPR016177DNA-binding domain
PRINTSPR003678.5E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MSSADSLASG RSRRAGPPLS RPKRVRVYFV DADATDTDSS GDEDERAKRR VREVIDIDVE  60
AAGSAPAALA LVPPKKRPLP FSAAAALARR RAAAAGFRRP YRGVRLRPWG KFAAEIRDPA  120
QRKRLWLGTF DTAEEAAAVY DDAALRLKGS QAVVNFPSAP VAPSPRMKLR PRREIPCPEA  180
AATASDPEGD DDDDDDGTLT SPLAAPSPAP LEPEPQAADA AAPFCPFASP TSVLRYGPDE  240
VAGAPALPAF DFLYGELGDI GAAAAPSKAA AAEFDWLPWW EGEDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2199157463ATERF1
3gcc_A3e-2199157463ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278771e-119KJ727877.1 Zea mays clone pUT5970 AP2-EREBP transcription factor (EREB52) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804895.10.0ethylene-responsive transcription factor CRF4-like
TrEMBLA0A3L6RFM91e-158A0A3L6RFM9_PANMI; Ethylene-responsive transcription factor CRF3-like
STRINGPavir.Ia04256.1.p1e-125(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131402226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.16e-17cytokinin response factor 5