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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.F02723.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
LBD |
Protein Properties |
Length: 415aa MW: 44265.6 Da PI: 4.5758 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.F02723.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 124.8 | 4.3e-39 | 75 | 173 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
aCaaCk++rrkC++dC+lapyfpa+q+++f n+h+lFG+sn+lk+lk+l+++ dams+l+y++++ra+dPv G++++il+l++qle + ael
Pahal.F02723.1 75 ACAACKYQRRKCNPDCPLAPYFPADQQRRFLNAHRLFGVSNILKTLKRLRPDLCADAMSTLIYQSDMRAQDPVGGCYRFILSLERQLELETAELT 169
7********************************************************************************************98 PP
DUF260 96 llke 99
++ +
Pahal.F02723.1 170 AVLH 173
8765 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 415 aa
Download sequence Send
to blast |
MTSSAAPAPA ASQPPRLHIT TSTTGASTIT SPSSHHSPSS ARSPHSASRS SSPRGSSNTG 60 AGAGGGSGSG GTNQACAACK YQRRKCNPDC PLAPYFPADQ QRRFLNAHRL FGVSNILKTL 120 KRLRPDLCAD AMSTLIYQSD MRAQDPVGGC YRFILSLERQ LELETAELTA VLHHLALCRQ 180 AAAAATAIPP QEGGMADLDV TSSNQPLLLN AEQEVVDALY ANHEPDAAIL QTDHVHHHDH 240 GDSPHDHGEQ QQQQQLFDYF YYEATASDDA SSKPTIDINL DNMQQFDFDD TCAAEKVDLS 300 TAGPEEIGQQ QHHLDMNCQI DHEDYEIKAA ALVDAFDMRQ ELQPVDVNAG VDVKAVDVNA 360 GIGVDIKAVD VNANLDVNVD LQEEDANNIA AGDGAAQMAA DLSHCRLGLG FSSF*
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