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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F02452.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 219aa MW: 23015.6 Da PI: 5.0425 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.3 | 1.7e-17 | 24 | 72 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr +k +grWv+eIr p++ r r++lg+++ +e+Aa+a +aa ++l+g Pahal.F02452.1 24 YKGVRLRK-WGRWVSEIRLPNS---RERIWLGSYDAPEKAARAFDAAYLCLRG 72 9*****99.**********933...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-24 | 23 | 82 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.969 | 23 | 82 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.7E-10 | 23 | 72 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-27 | 23 | 88 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.48E-23 | 24 | 82 | No hit | No description |
PRINTS | PR00367 | 4.7E-8 | 24 | 35 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-17 | 24 | 82 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.7E-8 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MVRPSNAAPP ERSSPPPGER RRSYKGVRLR KWGRWVSEIR LPNSRERIWL GSYDAPEKAA 60 RAFDAAYLCL RGPGGAGGLN FPGSPPDVGR TSDPEEVYAV AVSHANRAAA VDAAAPWDDA 120 TEQPSEPHDG GAPVHAAAVP PAPAAAPLQV PARSSDWAQL LMADLPPLFS PTYAENHGYL 180 PVSPTAADVN MDEIGSGSCP GLWSFDPSGA PVTDHVDI* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813239.1 | 1e-154 | ethylene-responsive transcription factor ERF015-like | ||||
TrEMBL | A0A2S3HL33 | 1e-153 | A0A2S3HL33_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Da01882.1.p | 7e-79 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 5e-23 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F02452.1 |