PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F02376.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 287aa MW: 31076 Da PI: 4.9965 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 113.6 | 1.3e-35 | 11 | 107 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rr+C++dC+la+yfp+++p+ f+n+h+lFG+sn+lk+l+++ +e+r++am++++ye++a+ P +G+v +i++lq++++q++ el Pahal.F02376.1 11 ACAACKYQRRRCTPDCPLAEYFPHDRPRVFRNAHRLFGVSNILKTLDRAGPEKRREAMHCIIYESQAWDMYPASGCVPIIHDLQKRIRQAEFELR 105 7*****************************************************************************************99987 PP DUF260 96 ll 97 ++ Pahal.F02376.1 106 RV 107 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.064 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.6E-35 | 11 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MAAASGGAGA ACAACKYQRR RCTPDCPLAE YFPHDRPRVF RNAHRLFGVS NILKTLDRAG 60 PEKRREAMHC IIYESQAWDM YPASGCVPII HDLQKRIRQA EFELRRVYAG IQAYRAAAAA 120 AQGGGPVPGS DGDPSALASA PPPFQFQPAT GDDDGGLLPF TMYGGDQQQM MMNAAASDDE 180 NIALQMPPWM MQPPQYDMTS APAVADMAGK VVPQQDHRFL VGATMVPQSE HQQQHIPIQP 240 AELDDEMSFF ADDGVDGDTE MPHESSMGSS EKKAMRAPKM EGANGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-23 | 2 | 127 | 2 | 124 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-23 | 2 | 127 | 2 | 124 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813245.1 | 0.0 | protein LATERAL ORGAN BOUNDARIES-like | ||||
TrEMBL | A0A2S3HLA1 | 0.0 | A0A2S3HLA1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J35697.1.p | 1e-153 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15459 | 13 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-24 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F02376.1 |