![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.F02366.2 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
bHLH |
Protein Properties |
Length: 442aa MW: 43804.5 Da PI: 6.5197 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.F02366.2 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Pha&pid=Pahal.F02366.2) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 37.1 | 5.7e-12 | 219 | 264 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq
Pahal.F02366.2 219 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 264
99***********************8.....6******************9 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 442 aa
Download sequence Send
to blast |
MQPGGREMAG GEGGPQQADD FFDQMLSTLP SAWADLGAGG AKSPWELPAG AEDAAVQAAF 60 GDDSSALLVS RLRQHQIGGD VVKSSPSSSP VMLQLSDLHR HGGGLAGAGA EESAGFSPLP 120 LFTDRSAPAR EEMEGGFRSP NSAGGDHSMF NGFGMHGAAA VQPQFAQGGS VSPQSLGGPA 180 VSGGATTPAG GAASSAGGGA APPRQVRQRA RRGQATDPHS IAERLRRERI AERMKSLQEL 240 VPNANKTDKA SMLDEIIDYV KFLQLQVKVL SMSRLGGAAG MAPLVASMSS EGNSNGSSSN 300 SGGGAKGSAA TKANGNGSGE NGNGGGGLRV AENQVAKMME EDMGTAMQYL QGKGLCLMPI 360 SLASAISSAT SSASLLSRPP PVLRHPAATA ASPAPPGQPH DASNCAAAAA AATSPASASS 420 AGGGGDDPRS TKDVGGGGGK Q*
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Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT062076 | 8e-63 | BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds. |
GenBank | KJ727938 | 8e-63 | KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds. |