PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.F02114.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 97aa MW: 10875.6 Da PI: 8.0055 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.9 | 9.4e-17 | 7 | 48 | 1 | 42 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 k ien+ r v fskR +g+lKKA+ELS+LC+a v ++ s Pahal.F02114.1 7 KLIENEEARRVCFSKRCQGLLKKASELSILCGAMVVSVVSSL 48 569*******************************98888775 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.8E-11 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.156 | 1 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-11 | 1 | 21 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 3.43E-17 | 2 | 55 | No hit | No description |
SuperFamily | SSF55455 | 3.66E-16 | 2 | 55 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.2E-18 | 9 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-11 | 21 | 36 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-11 | 36 | 57 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 97 aa Download sequence Send to blast |
MQRIEFKLIE NEEARRVCFS KRCQGLLKKA SELSILCGAM VVSVVSSLED VIDHFTILVM 60 ESHASSSHDS GGVVADTVHK LNIEHSKLQH CWRLRR* |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002459568.2 | 3e-23 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A3L6PQE4 | 2e-50 | A0A3L6PQE4_PANMI; Uncharacterized protein | ||||
STRING | Sb02g006710.1 | 1e-22 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57390.1 | 4e-13 | AGAMOUS-like 18 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.F02114.1 |