PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01979.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 296aa    MW: 31153.1 Da    PI: 8.7374
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01979.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ lv +v+ +G+g+W++++   g+ R+ k+c++rw +yl
   Pahal.F01979.1 14 KGPWTPEEDLVLVSYVQDHGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding48.81.6e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++l++++ ++lG++ W++Ia++++  Rt++++k++w+++l
   Pahal.F01979.1  67 RGNFSDQEEKLIIHLQALLGNR-WAAIASYLP-DRTDNDIKNFWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.503961IPR017930Myb domain
SuperFamilySSF466891.76E-2911108IPR009057Homeodomain-like
SMARTSM007171.1E-121363IPR001005SANT/Myb domain
PfamPF002492.0E-151461IPR001005SANT/Myb domain
CDDcd001673.33E-111661No hitNo description
PROSITE profilePS5129424.21162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-2465116IPR009057Homeodomain-like
SMARTSM007174.5E-1666114IPR001005SANT/Myb domain
PfamPF002498.4E-1567112IPR001005SANT/Myb domain
CDDcd001674.51E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGRPPCCEKT GVKKGPWTPE EDLVLVSYVQ DHGPGNWRAV PTNTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF SDQEEKLIIH LQALLGNRWA AIASYLPDRT DNDIKNFWNT HLKKKLSRMD  120
AGGDGAGAGG AVARSGRSAA PKGQWERRLQ TDIHTARQAL REALSLDPAL PLAKTEPQPL  180
PLLMPQPAPA PPSQAAYASS AENIARLLEG WMRPGTGSAG KASSGSRSSA SAVSGGEGAS  240
ASHSGTPGGS TGTSKAEDAG PVPAFSMLES WLLDDGMGHG DAGLMGGLAD PCEFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-25141164105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-25141164105C-Myb DNA-Binding Domain
1msf_C2e-25141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00579DAPTransfer from AT5G62470Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821217.10.0myb-related protein 306-like isoform X1
SwissprotP813921e-104MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2S3I2R50.0A0A2S3I2R5_9POAL; Uncharacterized protein
STRINGPavir.Fa00895.1.p1e-164(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.21e-88myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]