PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01696.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 330aa    MW: 36747.6 Da    PI: 4.8768
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01696.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.41.6e-1727113286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergfer.spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W++ e+ +Li+a+ e++++l+rg+lk+++Weev++ +           ++r + +qC++k+e+l+kry+ ++++         s + +f++++
  Pahal.F01696.1  27 WSEVETFHLIDAYDERWTALGRGQLKAQQWEEVAADVaarcaatPGVTVQRkTGTQCRHKLEKLRKRYRTEAARPVT------SLWTFFRRMD 113
                     *************************************9999976444444459*****************9998875......5899999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.4E-1825115No hitNo description
SMARTSM005951.2E-434120IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAAGAHDDAD EPPRRSALKK SAPAQPWSEV ETFHLIDAYD ERWTALGRGQ LKAQQWEEVA  60
ADVAARCAAT PGVTVQRKTG TQCRHKLEKL RKRYRTEAAR PVTSLWTFFR RMDQLERGPL  120
AVSSAYPPAA GSPTGAASDE EEEEEEEEEE EEEEEEEENE EEEEELVPRN NNTRSINGII  180
REFGSGLAPR HPQLQLQQPP SSITPSTAPP RKRVAYEAFQ AKAAAAAAAA VAADKAKEEE  240
VELFRRPSGR GGANAQLSAV LRDFSEGVMR LERRRMEMQW EIERGWQETE ARHAKMLQDA  300
QRQLRDTVAA SCALPPKKAR RDYGSSGDS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820374.10.0uncharacterized protein LOC112896572
TrEMBLA0A2S3I3D00.0A0A2S3I3D0_9POAL; Uncharacterized protein
TrEMBLA0A2T8IHE00.0A0A2T8IHE0_9POAL; Uncharacterized protein
STRINGPavir.J15698.1.p1e-176(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100782933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.12e-22Trihelix family protein