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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F01634.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 275aa MW: 29441.8 Da PI: 5.7654 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.9 | 8.1e-21 | 136 | 185 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ r r +lg+f+taeeAa+a+++a+ +++g Pahal.F01634.1 136 KYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAARAYDRAAIEFRG 185 8********.**********82....48************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.4E-14 | 136 | 185 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.2E-37 | 136 | 199 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.935 | 136 | 193 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 136 | 193 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-31 | 136 | 193 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 137 | 148 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.02E-28 | 139 | 192 | No hit | No description |
PRINTS | PR00367 | 1.8E-11 | 159 | 175 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MTNRIFSAMA GNQAYMIRFD GHFDDPSPSS AGAEPPEVPP PPFVGRAISP EQEHQVIVAA 60 LLHVVSGYTT PPPEIFPAAS AACRVCGMER CLGCEFFGGE GSAVIALDDA KSNVAAAPGA 120 AAAAAGQRRR RKKKNKYRGV RQRPWGKWAA EIRDPRRAVR KWLGTFDTAE EAARAYDRAA 180 IEFRGPRAKL NFSFPEQAAG HGEASNGDAS AAAKSSDNTL SPSLCSGDAE EQGQPAEWPR 240 GGQETGEQLW EGLQGLMTLD ETELWFPPTS NAWN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-20 | 133 | 192 | 2 | 62 | ATERF1 |
3gcc_A | 5e-20 | 133 | 192 | 2 | 62 | ATERF1 |
5wx9_A | 1e-19 | 136 | 192 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 133 | RRRRKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00469 | DAP | Transfer from AT4G34410 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU964453 | 1e-137 | EU964453.1 Zea mays clone 278992 AP2 domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821277.1 | 0.0 | ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 9e-31 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A2S3I367 | 0.0 | A0A2S3I367_9POAL; Uncharacterized protein | ||||
STRING | Si014237m | 1e-150 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 5e-24 | redox responsive transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F01634.1 |
Publications ? help Back to Top | |||
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