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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.F01622.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
bHLH |
Protein Properties |
Length: 250aa MW: 26967.2 Da PI: 7.4725 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.F01622.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 26.5 | 1.1e-08 | 174 | 214 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
r RR+ri +++ L++l+P +K++ a++L +A++Y+k L
Pahal.F01622.1 174 ARMRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 214
699*****************87.....8****************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010500 | Biological Process | transmitting tissue development |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0048462 | Biological Process | carpel formation |
GO:2000012 | Biological Process | regulation of auxin polar transport |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 250 aa
Download sequence Send
to blast |
MDFDMLNSHP EAQLELMNAM LQLEQLTAFP DHHGAMMMVP STPPSPPCMQ QQQQQAHHHL 60 SSSVPHHMSA GGANGRTTYH DHHQYSSAVT SSHASCNGSA RSEYAAQDYP GYGGAGAGEG 120 NGGGDGATAV GSSAMREMIF RVAALQPVNI DPEMVRPPKR RNVRISTDPQ SVAARMRRER 180 ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKTQVQS LERAAAASGR RPADDGGGAP 240 YPDRISGQW*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 155 | 160 | RPPKRR |
2 | 174 | 179 | RMRRER |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ726973 | 1e-155 | KJ726973.1 Zea mays clone pUT3674 bHLH transcription factor (bHLH113) gene, partial cds. |